Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0419
         (393 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)                   27   7.2  
SB_11579| Best HMM Match : BRF1 (HMM E-Value=5.2)                      27   7.2  

>SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)
          Length = 1054

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 217 NECRKYILDMNIYTNN*SGHKYCHTVKTVLLEC 119
           N+  KY+L  ++ +N+  G +  H+  + LL+C
Sbjct: 725 NQLYKYLLKNSLISNHQFGFRRLHSTMSALLDC 757


>SB_11579| Best HMM Match : BRF1 (HMM E-Value=5.2)
          Length = 118

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 316 ELNQQ*SKKKKTRGGARYPIR 378
           ELNQ+  KKKK   G R P+R
Sbjct: 8   ELNQREGKKKKEAKGKRAPVR 28


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,662,397
Number of Sequences: 59808
Number of extensions: 139480
Number of successful extensions: 279
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)