Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0419
         (393 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.3  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   3.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   3.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   5.1  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 73  FMNNSKFEFNKLFVASILKEQFLLCDN-TYDL 165
           + NNSK++F  +    +LK  +  C N TY +
Sbjct: 211 YTNNSKWDFKVIKATKVLK-MYACCPNDTYPM 241


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 73  FMNNSKFEFNKLFVASILKEQ 135
           F N+  F  NKL  +  LKE+
Sbjct: 546 FWNSINFNENKLHTSDTLKEE 566


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 73  FMNNSKFEFNKLFVASILKEQ 135
           F N+  F  NKL  +  LKE+
Sbjct: 546 FWNSINFNENKLHTSDTLKEE 566


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 315  RTKSTIIQKKKNSRGGPVP 371
            R+K+ I Q  +NSR  PVP
Sbjct: 1324 RSKALIDQLCRNSRRTPVP 1342


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 232 LEEEKNECRKYILDMNIYTNN*SGHKYCHT 143
           +E+ +NE +KY    N   N    H + HT
Sbjct: 189 IEKSENESKKYATSSNSLRNR--THGFQHT 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,115
Number of Sequences: 438
Number of extensions: 1569
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)