Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0419
         (393 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50910.1 68418.m06312 hypothetical protein                          28   2.6  
At2g01850.1 68415.m00118 xyloglucan:xyloglucosyl transferase / x...    28   2.6  
At1g02370.1 68414.m00183 pentatricopeptide (PPR) repeat-containi...    26   7.9  

>At5g50910.1 68418.m06312 hypothetical protein 
          Length = 116

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -2

Query: 149 SHSKNCSFRMLATKSLLNSN----FELFMKIKMYTFRILLI 39
           S++ NC+FR  A+ +L  SN       FM+ ++YT R  ++
Sbjct: 42  SYNFNCAFRFFASSNLSKSNPKYLMTRFMRERLYTSRPTIV 82


>At2g01850.1 68415.m00118 xyloglucan:xyloglucosyl transferase /
           xyloglucan endotransglycosylase / endo-xyloglucan
           transferase (EXGT-A3) identical to endoxyloglucan
           transferase [Arabidopsis thaliana] GI:5533313
          Length = 333

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 186 FISNIYFLHSFFSSS 230
           F+SN Y+LH FFS+S
Sbjct: 65  FVSNDYYLHGFFSAS 79


>At1g02370.1 68414.m00183 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 537

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 256 LAEIYCLALEEEKNECRKYILDMNIYTNN 170
           L   YC+ LEEEK +    I+D   + NN
Sbjct: 178 LMNCYCVELEEEKAKAHFEIMDELNFVNN 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,927,823
Number of Sequences: 28952
Number of extensions: 101275
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)