Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0418
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    42   1e-04
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    35   0.014
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    34   0.019
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    31   0.13 
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    30   0.31 
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    27   2.2  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    27   2.2  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    27   2.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.8  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   5.0  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    26   6.6  

>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +2

Query: 101 LYVYTTELFPTVARNMAMGASSTTTRAGSMLAPFFGELNVLASWLPPIVFG-LFPVLGIV 277
           LY YT E+FP+  R  A+G +++  R   + +P       L +  P  V G LF   GI+
Sbjct: 481 LYAYTPEVFPSKVRGTAVGLAASANRILGIFSPVIAMRANLTTSAPIFVSGALFIFAGIL 540

Query: 278 ACYFLPETKGK 310
             +F  E +GK
Sbjct: 541 VVFFPYEPRGK 551


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +2

Query: 104 YVYTTELFPTVARNMAMGASSTTTRAGSMLAP-FFGELNVLASWLPPI-VFGLFPVLGIV 277
           ++Y  E+FP   R  A G S+   + G++LA   F  L  +  +   + +F      GI+
Sbjct: 470 FIYPAEVFPARVRGTAHGISAALGKCGAILASLLFNFLTSIIGYGNVMWIFCGCMWGGIL 529

Query: 278 ACYFLPETKGKQLDD 322
               LPETKG+  D+
Sbjct: 530 FTLLLPETKGRDADE 544


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +2

Query: 104 YVYTTELFPTVARNMAMGASSTTTRAGSMLAP-FFGEL-NVLASWLPPIVFGLFPVLGIV 277
           ++Y  E+FP   R  A G S+   + G++LA   F  L  V+       +F      GI+
Sbjct: 469 FIYPAEVFPARVRGTAHGVSAALGKCGAILASLLFNFLTGVIGYGNVMWIFCGCMWGGIL 528

Query: 278 ACYFLPETKGKQLDD 322
               LPETKG+  D+
Sbjct: 529 FTLLLPETKGRDADE 543


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +2

Query: 92  STFLYVYTTELFPTVARNMAMGASSTTTRAGSML-APFFGELNVLASW--LPPIVFGLFP 262
           +T  +V   E+FP+  R  + G  +   +AG++L A  F +L  +  +  +  I FG   
Sbjct: 475 NTTCFVIPAEVFPSRVRAFSHGICAACGKAGAILSALLFNKLTEVIGFGNVLWIFFGCM- 533

Query: 263 VLGIVACYFLPETKGKQLD 319
           V G V    LPET  +  D
Sbjct: 534 VAGAVVTLILPETANRDAD 552


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 24/86 (27%), Positives = 36/86 (41%)
 Frame = +3

Query: 171 PREPALCWHHSLAS*MYWLPGYHPLYSDCFQY*ESWPAISFQRRKGNS*TIIWTNLDLFK 350
           PRE  LC+ H        +    P+      Y +S PA     R     T+ WT+  +F 
Sbjct: 307 PRELTLCYTHLNQETRGLVLRQRPVNLHHLYYPDSLPAPLLLNRVCEFPTV-WTSATVFY 365

Query: 351 ITIEIDKSIHKRNKHIFLYIKLATRP 428
           + + I KSI   +   FL +  +T P
Sbjct: 366 LAVSIPKSIVLESPMEFLCLTWSTTP 391


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 233 LPPIVFGLFPVLGIVACYFLPETKGKQ--LDDHLD 331
           L  ++FGLF VLG+ +C  +  TKG     D H+D
Sbjct: 263 LKHMLFGLFQVLGVQSCVVI-VTKGLMYLFDKHID 296


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 233 LPPIVFGLFPVLGIVACYFLPETKGKQ--LDDHLD 331
           L  ++FGLF VLG+ +C  +  TKG     D H+D
Sbjct: 253 LKHMLFGLFQVLGVQSCVVI-VTKGLMYLFDKHID 286


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +3

Query: 90  VPHFYTCTLQSCSQRWLGIWPWALHPPPR 176
           V  F T  L S  Q WL    W L P PR
Sbjct: 361 VTGFRTALLNSFEQDWLASMSWNLSPGPR 389


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/67 (26%), Positives = 24/67 (35%)
 Frame = -1

Query: 297  SGRK*QATIPSTGNSPNTMGGSQEASTFSSPKNGANIEPARVVVDEAPMAIFRATVGNSS 118
            SG+       ST N P T           SP    +I      V E      R  VG SS
Sbjct: 1062 SGKDKLLLTSSTPNKPTTFFMPANEEILGSPAKDYDIHDQSYSVHELHSENMRENVGQSS 1121

Query: 117  VVYTYKN 97
            ++Y  ++
Sbjct: 1122 LIYNNRD 1128


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 92  NASRFCVSSLRRGHAN 45
           +ASRFCV SL+R  AN
Sbjct: 579 SASRFCVESLKRQKAN 594


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 363 IDKSIHKRNKHIFLYIKLATRPCFASETVIYY*FLHYLMDV--IIHINLPLQSLYLLKKP 536
           ++K I++RNKHI   +    R C+          + YL D   ++H +L  ++++L    
Sbjct: 444 LEKHINRRNKHIHGVMSKGLRNCYILLFARILEGVLYLHDAMHLVHRDLKPRNIFLSSGV 503

Query: 537 H 539
           H
Sbjct: 504 H 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,202,155
Number of Sequences: 5004
Number of extensions: 68583
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)