Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0416
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   0.90 
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   6.4  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    25   8.4  
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces...    25   8.4  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 282 LTRKFCY-IL*KFTYFTNLCFIKALPFKNELKIMINKYS 395
           +T   CY IL  F  +  LCF    PF  +  I+ N YS
Sbjct: 514 VTSPVCYQILTYFNMYRPLCFASIFPFIKQQFILFNDYS 552


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 324 FTNLCFIKALPFKNELKIMINKYSSTNH 407
           FTN   IKALP ++EL  M++K ++ NH
Sbjct: 27  FTNS--IKALPIQSELSAMMSKDNTLNH 52


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 635 SINSSSDLTSGMPSSCLSIRSCLAASATNINT 730
           S +SSS  +S   SS L+  S LA+S+TN  T
Sbjct: 69  SASSSSLTSSSAASSSLTSSSSLASSSTNSTT 100


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 581 SNACSDIQTRMFDWFTAEISKSSPKDFFHTSLEGL 477
           S  C+ +     + F +EI K  P D FH SLE L
Sbjct: 43  STLCAILAKAWNERFGSEIVKIIPMDGFHYSLEEL 77


>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 602 KEISISISNACSDIQTRMFDWFTAEISKSSPKDFF 498
           K +S+S+SN  S     + D+    I K S KD F
Sbjct: 19  KALSLSLSNLGSTKLGSLIDYMAQIIEKPSQKDLF 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,926
Number of Sequences: 5004
Number of extensions: 50247
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)