Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0416
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0267 - 32751431-32751489,32751600-32751645,32751886-327519...    28   6.6  
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917...    28   6.6  

>03_06_0267 -
           32751431-32751489,32751600-32751645,32751886-32751960,
           32752045-32752114,32752288-32752386,32752505-32752641,
           32753040-32753221,32753314-32753482,32753824-32753856,
           32753958-32754068,32754184-32754295,32755592-32755727,
           32756264-32756291
          Length = 418

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 611 AASFMLVISINSSSDLTSGMPSSCLSIR 694
           +AS  L++  NSSS +T  + S CL++R
Sbjct: 222 SASCRLILCCNSSSKVTEAVRSRCLNVR 249


>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
            26892215-26892266,26893530-26893795,26894007-26894229,
            26895154-26895327,26895408-26895485,26895566-26895817,
            26896138-26898204,26899477-26901322,26901474-26901574,
            26902179-26902535,26902681-26902799,26903558-26903559,
            26903630-26903662,26903709-26903841,26904285-26904537,
            26905688-26905912,26906401-26906466,26907373-26907471,
            26908528-26908545,26908546-26908893,26909878-26910354
          Length = 2522

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 380  HDL*LVFKWQSLNKTQISKISEFS 309
            HDL  VFKW SLN +   K+  FS
Sbjct: 1447 HDLAWVFKWWSLNYSPPHKLRSFS 1470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,058,982
Number of Sequences: 37544
Number of extensions: 244315
Number of successful extensions: 383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)