Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0416
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52517-1|AAA97927.1|  846|Caenorhabditis elegans hum-3 protein.        30   1.5  
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe...    30   1.5  
Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U52517-1|AAA97927.1|  846|Caenorhabditis elegans hum-3 protein.
          Length = 846

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 614 PLRFKEISISISNACSDIQTRMFDWFTAEISKSSP 510
           PL+  E S         I +++FDW  A+I+KS P
Sbjct: 214 PLKAHEASAGRDALAKAIYSKLFDWLVAQINKSIP 248


>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
           spermatogenesis protein15 protein.
          Length = 1219

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 614 PLRFKEISISISNACSDIQTRMFDWFTAEISKSSP 510
           PL+  E S         I +++FDW  A+I+KS P
Sbjct: 416 PLKAHEASAGRDALAKAIYSKLFDWLVAQINKSIP 450


>Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical
           protein T05E11.3 protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 226 DSLSYFHFFSKIAVMQRSNIYLKKNIFHGLTENLRKTIEN*K 101
           + LS+ HF ++  V  RS +Y+ K   + + +N  K IEN K
Sbjct: 347 EPLSHVHFSAEGEVSFRSILYVPKKSPNDMFQNYGKVIENIK 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,416,874
Number of Sequences: 27780
Number of extensions: 263282
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)