Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0415
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    79   5e-16
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    30   0.22 
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    26   3.6  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    26   4.8  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   8.4  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 79.0 bits (186), Expect = 5e-16
 Identities = 39/92 (42%), Positives = 62/92 (67%), Gaps = 3/92 (3%)
 Frame = +1

Query: 1   IIKKKLVRKVLDMLKKIPDDE--YEHFWKEYSTNIKLGVMEDPSNRSRLAKLLRFHSSHS 174
           +I+K LVR+ LDM  +I +D+  ++ F+  +S N+KLG+ ED +NR  LAKLLR++S +S
Sbjct: 386 VIRKNLVRRCLDMFNEIAEDKENFKTFYDAFSKNLKLGIHEDAANRPALAKLLRYNSLNS 445

Query: 175 -EEKTFLSDYVKRMKPKQHHIYYIAGSSRAEV 267
            ++   L DY+ +M   Q +IY+I G S+  V
Sbjct: 446 PDDLISLEDYITKMPEHQKNIYFITGESKQAV 477



 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 17/48 (35%), Positives = 31/48 (64%)
 Frame = +2

Query: 446 VEKSPFAERLVSRGYEVLYLTEAVDEYCLSSLPEYDGHKFQNIAQGNI 589
           VE SPF E   ++ ++VL++ + +DEY ++ L E++G K  NI +  +
Sbjct: 477 VENSPFLEIFRAKKFDVLFMVDPIDEYAVTQLKEFEGKKLVNITKDGL 524


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +1

Query: 34  DMLKKIPDDEYEHFWKEYSTNIKLGVMEDPSNRSRLAKLLRFHSSHSEEKTFLSDYVKRM 213
           D L  +    +E+ + ++++N K+  ++    R  ++     HSS +++ T+L    KR 
Sbjct: 593 DFLDPMDMLSFENHFSDFNSNRKVSPVKREVRRKYISSATTIHSSAAQDDTYLPSPTKRK 652

Query: 214 KP 219
            P
Sbjct: 653 MP 654


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 291 IHYKSANRGTF*DSLKTATDANIFIFTLYVLLMLK 395
           I Y S N  T  D L + TD+  FI T+Y+L  LK
Sbjct: 407 IQYLSQNDNTN-DVLYSITDSKQFISTIYILPFLK 440


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 223 AWASCASRSLTGRSSPPNGKSGTAAAWQDGSGCWDLPSPR 104
           A +S  ++S T  SSPP   S T+    + S     PSP+
Sbjct: 464 AKSSEEAKSTTNDSSPPKDSSSTSTQPTEQSNAQQAPSPK 503


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 464 AERLVSRGYEVLYLTEAVDEYCLSSLPEYDGHKFQNIAQGNIRP 595
           ++RLV  G  VL+L    +EY +  +P    H + ++   +I+P
Sbjct: 368 SDRLVDGGRLVLWLPTITEEYGIDDIP---SHPYLSLIYNSIQP 408


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 443 QVEKSPFAERLVSRGYEVLYLTEAVDEYCLSSLPEYD 553
           + EK    E  + R  E  +  E V  YC SS+ EYD
Sbjct: 620 EAEKLAGYENAMLRNLEDNHWDEEVQAYCDSSVDEYD 656


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 265  PQRGWSPRCSRCGVAWASCASRSLTGRSS 179
            P   W  +C  CG ++  C S   +G +S
Sbjct: 956  PPNRWEKKCEVCGNSFGVCVSSPNSGLTS 984


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,843
Number of Sequences: 5004
Number of extensions: 46022
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)