Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0415
(597 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0) 124 7e-29
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0) 91 8e-19
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029) 29 2.9
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 29 3.8
SB_56162| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 29 3.8
SB_52733| Best HMM Match : DUF948 (HMM E-Value=0.37) 28 5.0
SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05) 28 5.0
SB_436| Best HMM Match : SAP (HMM E-Value=0.03) 28 5.0
SB_28044| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09) 28 6.6
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 855
Score = 124 bits (298), Expect = 7e-29
Identities = 61/91 (67%), Positives = 77/91 (84%), Gaps = 2/91 (2%)
Frame = +1
Query: 1 IIKKKLVRKVLDMLKKIPDDEY-EHFWKEYSTNIKLGVMEDPSNRSRLAKLLRFHSSHSE 177
+IKKKLVRK LDM+KKIP ++Y FWKEYSTNIKLGV+ED SNR+RLAKLLRF+SS+SE
Sbjct: 443 VIKKKLVRKALDMIKKIPKEDYMATFWKEYSTNIKLGVIEDHSNRTRLAKLLRFYSSNSE 502
Query: 178 -EKTFLSDYVKRMKPKQHHIYYIAGSSRAEV 267
+ T L++Y++RMK KQ IY++AG +R EV
Sbjct: 503 KDMTSLAEYIERMKEKQDVIYFMAGHNRKEV 533
Score = 75.8 bits (178), Expect = 3e-14
Identities = 31/52 (59%), Positives = 41/52 (78%)
Frame = +2
Query: 437 RLQVEKSPFAERLVSRGYEVLYLTEAVDEYCLSSLPEYDGHKFQNIAQGNIR 592
R +VE SPF E+L+ GYEVLYL E VDEYC+ SLPE++G KFQN+A+ ++
Sbjct: 530 RKEVESSPFVEKLLKEGYEVLYLIEPVDEYCMQSLPEFEGKKFQNVAKEGLK 581
>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 581
Score = 90.6 bits (215), Expect = 8e-19
Identities = 43/93 (46%), Positives = 66/93 (70%), Gaps = 3/93 (3%)
Frame = +1
Query: 1 IIKKKLVRKVLDMLKKIPDDE--YEHFWKEYSTNIKLGVMEDPSNRSRLAKLLRFHSSHS 174
+I+K LV+K +++ +I +D+ Y+ F++++ N+KLG+ ED NR++LA LLR+HSS S
Sbjct: 342 VIRKNLVKKCMELFNEIAEDQDNYKKFYEQFGKNLKLGIHEDSVNRAKLADLLRYHSSSS 401
Query: 175 -EEKTFLSDYVKRMKPKQHHIYYIAGSSRAEVS 270
+E T L DYV RMK Q IY+I G S+ +VS
Sbjct: 402 GDELTSLKDYVTRMKENQKDIYFITGESKDQVS 434
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +2
Query: 443 QVEKSPFAERLVSRGYEVLYLTEAVDEYCLSSLPEYDGHKFQNIAQ 580
QV S F ER+ SRG+EVLY+ E +DEY + L EYDG K ++ +
Sbjct: 432 QVSHSAFVERVKSRGFEVLYMVEPIDEYAIQQLKEYDGKKLVSVTK 477
>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
Length = 1769
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 567 WNLWPSYSGSEERQYSSTASVRYSTS*PRLTRRSANGDFSTC 442
W+LW S + ER ++ VR T PR S NG F C
Sbjct: 948 WSLWMSKQLNAERYWTRVPGVR--THQPRCLIDSKNGKFEMC 987
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 172 SEEKTFLSDYVKRMKPKQHHIYYIAGSSRAEVSVARD 282
S +K +S VKR+K H+ ++RA +S+ARD
Sbjct: 864 SNDKDHISAEVKRLKDLAMHLEEQVQNARANLSIARD 900
>SB_56162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 380 DVKCENKNICICSSFQRISEGATVRRFIMNGHQSRATL 267
DV E + +C C++F++ G VRR ++ + RATL
Sbjct: 36 DVMFEGEAVC-CTTFEKWYMGVGVRRIVITEGKIRATL 72
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -2
Query: 335 QRISEGATVRRFIMNGHQ--SRATLTSARLEPAM**MWCCLGFMRFT*SDRKVFSSEWEE 162
Q I ++VR I+ G+Q +R LT ++ +M +W L F+ T D +EW
Sbjct: 168 QAIKSSSSVRWKILLGYQCRNRLLLTGTPIQNSMAELWALLHFIMPTLFDNHEEFNEWFS 227
Query: 161 WNRSSLARRERLLGSSITPSLMLV 90
+ S A + L+ + L ++
Sbjct: 228 KDIESHAENKSLIDQNQLSRLHMI 251
>SB_52733| Best HMM Match : DUF948 (HMM E-Value=0.37)
Length = 1147
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 55 DDEYEHFWKEYSTN-IKLGVMEDPSN 129
D E+E++WKE ST I LG+ D N
Sbjct: 516 DVEFENYWKEISTALIALGISSDEVN 541
>SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05)
Length = 897
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 7 KKKLVRKVLDMLKKIPDDEYEHFWKEYS 90
+K L+RK+L+ +P +E EHF +E+S
Sbjct: 95 RKALLRKILEDCSLVPSEEREHF-QEFS 121
>SB_436| Best HMM Match : SAP (HMM E-Value=0.03)
Length = 227
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 595 RSNISLGDVLELVAV-VLGQRGEAVLVHGLGEVQHLVAAAHQALGERRLLHLQP 437
RS +S GD ++ VLG R +A+ + G Q + QA R LHLQP
Sbjct: 160 RSRLSGGDEFSRLSTEVLGLRLQALNLPSGGTQQQQIDRLRQATQGLRRLHLQP 213
>SB_28044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -1
Query: 123 GIFHHPELDVGGVLLPEVFVFI-VRN 49
G+ +H E D+ L+P+ FVF+ VRN
Sbjct: 712 GVMNHKETDLFNGLIPQCFVFVMVRN 737
>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
Length = 918
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 129 PLPSCQAAAVPLFPFGGEDLPV-RLREAHEAQAT 227
P+ SC+ PL PF LP+ + E+HE++A+
Sbjct: 790 PIGSCKRFQRPLLPFSKTKLPLPKQLESHESKAS 823
>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4994
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = -3
Query: 250 SPRCSRCGVAWASCASRSLTGRSSPPNGKSGTAAAWQDGSGCWD 119
+P RC + A S+ G + P G T A GC+D
Sbjct: 1935 TPLTDRCYITLAQALGMSMGGAPAGPAGTGKTGLAQSGSWGCFD 1978
>SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2102
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 64 YEHFWKEYSTNIKLGVMEDPSNRS--RLAKLLRFHSSHSEEKTFLSDY-VKRMKPKQHHI 234
Y+ F + T +K+ P N++ + + H+S K+F+ DY + + P+ H
Sbjct: 1790 YKIFKEHNVTELKVYCDFTPPNKAWTLIESFAKVHNSDFRSKSFMDDYPLNQETPRNHER 1849
Query: 235 YYIA 246
Y +A
Sbjct: 1850 YRLA 1853
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,742,606
Number of Sequences: 59808
Number of extensions: 377458
Number of successful extensions: 1085
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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