Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0415
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.43 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.43 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.3  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +2

Query: 308 EPWH-LLRFF---ENCYRCKYFYFHTLRPVDVKNVRRNVSRGC 424
           EPWH +L       +CY+ +Y YF      ++ N   N+S  C
Sbjct: 84  EPWHGVLNATVLPNSCYQERYEYFPGFPGEEMWNPNTNISEDC 126


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +2

Query: 308 EPWH-LLRFF---ENCYRCKYFYFHTLRPVDVKNVRRNVSRGC 424
           EPWH +L       +CY+ +Y YF      ++ N   N+S  C
Sbjct: 84  EPWHGVLNATVLPNSCYQERYEYFPGFPGEEMWNPNTNISEDC 126


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 374 KCENKNICICSSFQR 330
           KC N+N+  C+ F++
Sbjct: 710 KCHNRNVTTCNMFRK 724


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,917
Number of Sequences: 438
Number of extensions: 3189
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)