Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0415
(597 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56000.1 68418.m06988 heat shock protein 81-4 (HSP81-4) nearl... 86 1e-17
At5g56030.1 68418.m06991 heat shock protein 81-2 (HSP81-2) nearl... 86 2e-17
At5g56010.1 68418.m06989 heat shock protein, putative strong sim... 86 2e-17
At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata format... 84 6e-17
At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata format... 84 6e-17
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea... 84 8e-17
At3g07770.1 68416.m00947 heat shock protein-related strong simil... 81 7e-16
At2g04030.2 68415.m00372 heat shock protein, putative strong sim... 78 5e-15
At2g04030.1 68415.m00371 heat shock protein, putative strong sim... 77 7e-15
At1g69100.1 68414.m07907 aspartyl protease family protein contai... 29 1.8
At3g05990.1 68416.m00684 leucine-rich repeat family protein cont... 29 3.1
At2g46960.2 68415.m05866 cytochrome P450 family protein similar ... 28 4.1
At2g46960.1 68415.m05865 cytochrome P450 family protein similar ... 28 4.1
At2g43940.1 68415.m05461 thiol methyltransferase, putative simil... 28 4.1
At4g27910.1 68417.m04006 PHD finger protein-related / SET domain... 27 9.5
At3g17850.1 68416.m02275 protein kinase, putative similar to IRE... 27 9.5
At3g15340.1 68416.m01936 expressed protein 27 9.5
At2g46370.2 68415.m05771 auxin-responsive GH3 family protein sim... 27 9.5
At2g46370.1 68415.m05770 auxin-responsive GH3 family protein sim... 27 9.5
At2g34060.1 68415.m04170 peroxidase, putative similar to peroxid... 27 9.5
>At5g56000.1 68418.m06988 heat shock protein 81-4 (HSP81-4) nearly
identical to heat shock protein hsp81.4 [Arabidopsis
thaliana] GI:1906828; contains Pfam profiles PF02518:
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
domain protein, PF00183: Hsp90 protein
Length = 699
Score = 86.2 bits (204), Expect = 1e-17
Identities = 41/92 (44%), Positives = 65/92 (70%), Gaps = 3/92 (3%)
Frame = +1
Query: 1 IIKKKLVRKVLDMLKKIPD--DEYEHFWKEYSTNIKLGVMEDPSNRSRLAKLLRFHSSHS 174
+I+K LV+K L++ +I + ++Y F++ +S N+KLG+ ED NR+++A+LLR+HS+ S
Sbjct: 382 VIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRTKIAELLRYHSTKS 441
Query: 175 -EEKTFLSDYVKRMKPKQHHIYYIAGSSRAEV 267
+E T L DYV RMK Q+ I+YI G S+ V
Sbjct: 442 GDELTSLKDYVTRMKEGQNEIFYITGESKKAV 473
Score = 54.0 bits (124), Expect = 7e-08
Identities = 21/49 (42%), Positives = 33/49 (67%)
Frame = +2
Query: 446 VEKSPFAERLVSRGYEVLYLTEAVDEYCLSSLPEYDGHKFQNIAQGNIR 592
VE SPF E+L +GYEVLY+ +A+DEY + L E++G K + + ++
Sbjct: 473 VENSPFLEKLKKKGYEVLYMVDAIDEYAIGQLKEFEGKKLVSATKEGLK 521
>At5g56030.1 68418.m06991 heat shock protein 81-2 (HSP81-2) nearly
identical to SP|P55737 Heat shock protein 81-2 (HSP81-2)
{Arabidopsis thaliana}
Length = 699
Score = 85.8 bits (203), Expect = 2e-17
Identities = 41/92 (44%), Positives = 65/92 (70%), Gaps = 3/92 (3%)
Frame = +1
Query: 1 IIKKKLVRKVLDMLKKIPD--DEYEHFWKEYSTNIKLGVMEDPSNRSRLAKLLRFHSSHS 174
+I+K LV+K L++ +I + ++Y F++ +S N+KLG+ ED NR+++A+LLR+HS+ S
Sbjct: 382 VIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRTKIAELLRYHSTKS 441
Query: 175 -EEKTFLSDYVKRMKPKQHHIYYIAGSSRAEV 267
+E T L DYV RMK Q+ I+YI G S+ V
Sbjct: 442 GDELTSLKDYVTRMKEGQNDIFYITGESKKAV 473
Score = 50.8 bits (116), Expect = 7e-07
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +2
Query: 446 VEKSPFAERLVSRGYEVLYLTEAVDEYCLSSLPEYDGHKFQNIAQGNIR 592
VE SPF E+L +G EVLY+ +A+DEY + L E++G K + + ++
Sbjct: 473 VENSPFLEKLKKKGIEVLYMVDAIDEYAIGQLKEFEGKKLVSATKEGLK 521
>At5g56010.1 68418.m06989 heat shock protein, putative strong
similarity to SP|P55737 Heat shock protein 81-2
(HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00183: Hsp90 protein
Length = 699
Score = 85.8 bits (203), Expect = 2e-17
Identities = 41/92 (44%), Positives = 65/92 (70%), Gaps = 3/92 (3%)
Frame = +1
Query: 1 IIKKKLVRKVLDMLKKIPD--DEYEHFWKEYSTNIKLGVMEDPSNRSRLAKLLRFHSSHS 174
+I+K LV+K L++ +I + ++Y F++ +S N+KLG+ ED NR+++A+LLR+HS+ S
Sbjct: 382 VIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRTKIAELLRYHSTKS 441
Query: 175 -EEKTFLSDYVKRMKPKQHHIYYIAGSSRAEV 267
+E T L DYV RMK Q+ I+YI G S+ V
Sbjct: 442 GDELTSLKDYVTRMKEGQNDIFYITGESKKAV 473
Score = 50.8 bits (116), Expect = 7e-07
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +2
Query: 446 VEKSPFAERLVSRGYEVLYLTEAVDEYCLSSLPEYDGHKFQNIAQGNIR 592
VE SPF E+L +G EVLY+ +A+DEY + L E++G K + + ++
Sbjct: 473 VENSPFLEKLKKKGIEVLYMVDAIDEYAIGQLKEFEGKKLVSATKEGLK 521
>At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata formation
protein, putative nearly identical to SHEPHERD
[Arabidopsis thaliana] GI:19570872; contains Pfam
profiles PF02518: ATPase, histidine kinase-, DNA gyrase
B-, and HSP90-like domain protein, PF00183: Hsp90
protein
Length = 823
Score = 84.2 bits (199), Expect = 6e-17
Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 25/113 (22%)
Frame = +1
Query: 4 IKKKLVRKVLDMLKKI----PDD--------------------EYEHFWKEYSTNIKLGV 111
IKKKL+RK LDM++K+ PD+ +Y FW E+ ++KLG+
Sbjct: 467 IKKKLIRKALDMIRKLAEEDPDEIHDDEKKDVEKSGENDEKKGQYTKFWNEFGKSVKLGI 526
Query: 112 MEDPSNRSRLAKLLRFHSSHSEEK-TFLSDYVKRMKPKQHHIYYIAGSSRAEV 267
+ED +NR+RLAKLLRF ++ S+ K T L Y+KRMK Q I+YI GSS+ ++
Sbjct: 527 IEDAANRNRLAKLLRFETTKSDGKLTSLDQYIKRMKKSQKDIFYITGSSKEQL 579
Score = 63.3 bits (147), Expect = 1e-10
Identities = 25/54 (46%), Positives = 40/54 (74%)
Frame = +2
Query: 431 SRRLQVEKSPFAERLVSRGYEVLYLTEAVDEYCLSSLPEYDGHKFQNIAQGNIR 592
S + Q+EKSPF ERL+ +GYEV++ T+ VDEY + L +Y+ KFQN+++ ++
Sbjct: 574 SSKEQLEKSPFLERLIKKGYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLK 627
>At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata formation
protein, putative nearly identical to SHEPHERD
[Arabidopsis thaliana] GI:19570872; contains Pfam
profiles PF02518: ATPase, histidine kinase-, DNA gyrase
B-, and HSP90-like domain protein, PF00183: Hsp90
protein
Length = 823
Score = 84.2 bits (199), Expect = 6e-17
Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 25/113 (22%)
Frame = +1
Query: 4 IKKKLVRKVLDMLKKI----PDD--------------------EYEHFWKEYSTNIKLGV 111
IKKKL+RK LDM++K+ PD+ +Y FW E+ ++KLG+
Sbjct: 467 IKKKLIRKALDMIRKLAEEDPDEIHDDEKKDVEKSGENDEKKGQYTKFWNEFGKSVKLGI 526
Query: 112 MEDPSNRSRLAKLLRFHSSHSEEK-TFLSDYVKRMKPKQHHIYYIAGSSRAEV 267
+ED +NR+RLAKLLRF ++ S+ K T L Y+KRMK Q I+YI GSS+ ++
Sbjct: 527 IEDAANRNRLAKLLRFETTKSDGKLTSLDQYIKRMKKSQKDIFYITGSSKEQL 579
Score = 63.3 bits (147), Expect = 1e-10
Identities = 25/54 (46%), Positives = 40/54 (74%)
Frame = +2
Query: 431 SRRLQVEKSPFAERLVSRGYEVLYLTEAVDEYCLSSLPEYDGHKFQNIAQGNIR 592
S + Q+EKSPF ERL+ +GYEV++ T+ VDEY + L +Y+ KFQN+++ ++
Sbjct: 574 SSKEQLEKSPFLERLIKKGYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLK 627
>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
shock protein 83 (HSP83) nearly identical to SP|P27323
Heat shock protein 81-1 (HSP81-1) (Heat shock protein
83) {Arabidopsis thaliana}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00183: Hsp90 protein
Length = 705
Score = 83.8 bits (198), Expect = 8e-17
Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 3/92 (3%)
Frame = +1
Query: 1 IIKKKLVRKVLDMLKKIPD--DEYEHFWKEYSTNIKLGVMEDPSNRSRLAKLLRFHSSHS 174
+I+K LV+K ++M +I + ++Y F++ +S N+KLG+ ED NR ++A LLR+HS+ S
Sbjct: 388 VIRKNLVKKCIEMFNEIAENKEDYTKFYEAFSKNLKLGIHEDSQNRGKIADLLRYHSTKS 447
Query: 175 -EEKTFLSDYVKRMKPKQHHIYYIAGSSRAEV 267
+E T DYV RMK Q I+YI G S+ V
Sbjct: 448 GDEMTSFKDYVTRMKEGQKDIFYITGESKKAV 479
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = +2
Query: 446 VEKSPFAERLVSRGYEVLYLTEAVDEYCLSSLPEYDGHKFQNIAQGNIR 592
VE SPF ERL RGYEVLY+ +A+DEY + L EYDG K + + ++
Sbjct: 479 VENSPFLERLKKRGYEVLYMVDAIDEYAVGQLKEYDGKKLVSATKEGLK 527
>At3g07770.1 68416.m00947 heat shock protein-related strong
similarity to heat-shock protein [Secale cereale]
GI:556673; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 803
Score = 80.6 bits (190), Expect = 7e-16
Identities = 42/90 (46%), Positives = 57/90 (63%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 IIKKKLVRKVLDMLKKIP----DDEYEHFWKEYSTNIKLGVMEDPSNRSRLAKLLRFHSS 168
I+KK+LVRK DM+ I ++YE FW + ++KLG +ED N R+A LLRF SS
Sbjct: 475 IMKKRLVRKAFDMILGISLSENREDYEKFWDNFGKHLKLGCIEDRENHKRIAPLLRFFSS 534
Query: 169 HSE-EKTFLSDYVKRMKPKQHHIYYIAGSS 255
SE + L +YV+ MKP+Q IY+IA S
Sbjct: 535 QSENDMISLDEYVENMKPEQKAIYFIASDS 564
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +2
Query: 449 EKSPFAERLVSRGYEVLYLTEAVDEYCLSSLPEYDGHKFQNIAQGNI 589
+ +PF E+++ +G EVLYL E +DE + SL Y F +I++ ++
Sbjct: 569 KNAPFLEKMLEKGLEVLYLVEPIDEVAVQSLKAYKEKDFVDISKEDL 615
>At2g04030.2 68415.m00372 heat shock protein, putative strong
similarity to heat shock protein [Arabidopsis thaliana]
GI:1906830; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 777
Score = 77.8 bits (183), Expect = 5e-15
Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 IIKKKLVRKVLDMLKKIPDDEY-EHFWKEYSTNIKLGVMEDPSNRSRLAKLLRFHSSHSE 177
I++K+L+RK DM+++I + E E FW+ + +KLG +ED N R+ LLRF SS +E
Sbjct: 452 IMRKRLIRKTFDMIQEISESENKEKFWENFGRFLKLGCIEDTGNHKRITPLLRFFSSKNE 511
Query: 178 EK-TFLSDYVKRMKPKQHHIYYIAGSS 255
E+ T L DY++ M Q IYY+A S
Sbjct: 512 EELTSLDDYIENMGENQKAIYYLATDS 538
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +2
Query: 449 EKSPFAERLVSRGYEVLYLTEAVDEYCLSSLPEYDGHKFQNIAQGNI 589
+ +PF E+L+ + EVLYL E +DE + +L Y KF +I++ ++
Sbjct: 543 KSAPFLEKLIQKDIEVLYLVEPIDEVAIQNLQTYKEKKFVDISKEDL 589
>At2g04030.1 68415.m00371 heat shock protein, putative strong
similarity to heat shock protein [Arabidopsis thaliana]
GI:1906830; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 780
Score = 77.4 bits (182), Expect = 7e-15
Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 IIKKKLVRKVLDMLKKIPDDE----YEHFWKEYSTNIKLGVMEDPSNRSRLAKLLRFHSS 168
I++K+L+RK DM+++I + E Y+ FW+ + +KLG +ED N R+ LLRF SS
Sbjct: 452 IMRKRLIRKTFDMIQEISESENKEDYKKFWENFGRFLKLGCIEDTGNHKRITPLLRFFSS 511
Query: 169 HSEEK-TFLSDYVKRMKPKQHHIYYIAGSS 255
+EE+ T L DY++ M Q IYY+A S
Sbjct: 512 KNEEELTSLDDYIENMGENQKAIYYLATDS 541
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +2
Query: 449 EKSPFAERLVSRGYEVLYLTEAVDEYCLSSLPEYDGHKFQNIAQGNI 589
+ +PF E+L+ + EVLYL E +DE + +L Y KF +I++ ++
Sbjct: 546 KSAPFLEKLIQKDIEVLYLVEPIDEVAIQNLQTYKEKKFVDISKEDL 592
>At1g69100.1 68414.m07907 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 343
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 141 KTGAVAGIFHHPELDVGGVLLPEVFVFIVRN 49
+TG+V GI ++VGGV++ +F+ RN
Sbjct: 110 ETGSVVGILAQDNVNVGGVVIKSQDLFLARN 140
>At3g05990.1 68416.m00684 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leaf
senescence-associated receptor-like protein kinase
[Phaseolus vulgaris] gi|9837280|gb|AAG00510
Length = 517
Score = 28.7 bits (61), Expect = 3.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 46 KIPDDEYEHFWKEYSTN 96
+ PDD+++ FW+ YS N
Sbjct: 211 RFPDDQFDRFWEPYSLN 227
>At2g46960.2 68415.m05866 cytochrome P450 family protein similar to
cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
contains Pfam profile: PF00067: Cytochrome P450;
supported by cDNA: gi_13605860_gb_AF367329.1_AF367329
Length = 519
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 79 KEYSTNIKLGVMEDPSNRSRLAKLLRFHS 165
+E S NIKLG +E P + + LL+ HS
Sbjct: 395 REASVNIKLGDLEIPKGTTVVIPLLKMHS 423
>At2g46960.1 68415.m05865 cytochrome P450 family protein similar to
cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
contains Pfam profile: PF00067: Cytochrome P450;
supported by cDNA: gi_13605860_gb_AF367329.1_AF367329
Length = 403
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 79 KEYSTNIKLGVMEDPSNRSRLAKLLRFHS 165
+E S NIKLG +E P + + LL+ HS
Sbjct: 279 REASVNIKLGDLEIPKGTTVVIPLLKMHS 307
>At2g43940.1 68415.m05461 thiol methyltransferase, putative similar
to thiol methyltransferase 2 GI:14583121 from [Brassica
oleracea]
Length = 226
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 229 GVAWASCASRSLTGRSSPPNGKSGTAAAWQDGSGCWDLPSP 107
G A + +SR L R N G +W+ G+ WDL P
Sbjct: 5 GKATSLQSSRDLFHRLMSENSSGGWEKSWEAGATPWDLGKP 45
>At4g27910.1 68417.m04006 PHD finger protein-related / SET
domain-containing protein (TX4) nearly identical over
285 amino acids to trithorax 4 [Arabidopsis thaliana]
GI:16118405; contains Pfam profiles PF00856: SET domain,
PF00855: PWWP domain; identical to cDNA trithorax 4
(TX4) partial cds GI:16118404
Length = 1027
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 88 STNIKLGVMEDPSNRSRLAKLLRFHSSHSEE 180
+TN+K ++ S S L K RFH H++E
Sbjct: 154 ATNLKSKELDRKSKYSALCKEERFHEQHNDE 184
>At3g17850.1 68416.m02275 protein kinase, putative similar to IRE
(incomplete root hair elongation) [Arabidopsis thaliana]
gi|6729346|dbj|BAA89783; contains protein kinase domain
Pfam:PF00069
Length = 1296
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 265 PQRGWSPRCSRCGVAWASCASRSLTGRSSPPNGKSG 158
P R SP G + AS S TGRS +G+SG
Sbjct: 214 PPRSLSPTLPPSGSRLQNVASSSGTGRSEMSSGRSG 249
>At3g15340.1 68416.m01936 expressed protein
Length = 487
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 154 RFHSSHSEEKTFLSDYVKRMKP 219
RF + +++K F DYVKR+ P
Sbjct: 320 RFMTQWNDDKAFRDDYVKRISP 341
>At2g46370.2 68415.m05771 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 575
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = +1
Query: 64 YEHFWKEYSTNIKLGVMED----PSNRSRLAKLL 153
+E W+E T+IK GV+ + PS R+ ++KLL
Sbjct: 234 FEQVWEEIVTDIKDGVLSNRITVPSVRTAMSKLL 267
>At2g46370.1 68415.m05770 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 575
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = +1
Query: 64 YEHFWKEYSTNIKLGVMED----PSNRSRLAKLL 153
+E W+E T+IK GV+ + PS R+ ++KLL
Sbjct: 234 FEQVWEEIVTDIKDGVLSNRITVPSVRTAMSKLL 267
>At2g34060.1 68415.m04170 peroxidase, putative similar to peroxidase
ATP20a {Arabidopsis thaliana} GP|9757794|dbj|BAB08292
Length = 346
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 430 RSAPAGNIPPNIFNINRT*SVKIKIFAS 347
+ + A N+PPNI N T IK+FAS
Sbjct: 170 KRSTAKNVPPNIPRSNSTVDQLIKLFAS 197
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,473,078
Number of Sequences: 28952
Number of extensions: 259406
Number of successful extensions: 896
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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