Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0414
         (326 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   2.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   2.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   2.5  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   2.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   7.6  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    20   7.6  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    20   7.6  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 143 NLPHVSKWVTAFTW*SLIRLRKDF 214
           N  ++ ++ TAFT   L RL K+F
Sbjct: 67  NDQNIRRYRTAFTREQLARLEKEF 90


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 134 NLSNLPHVSKWVTAFTW 184
           N+S++P   KW++  +W
Sbjct: 577 NVSSIPIYFKWLSFLSW 593


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 134 NLSNLPHVSKWVTAFTW 184
           N+S++P   KW++  +W
Sbjct: 577 NVSSIPIYFKWLSFLSW 593


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 235 AINSFTHNCTEXXXXXLEGGPGT 303
           A+   TH+ TE     LEG P T
Sbjct: 504 AVPIVTHSLTELRHLSLEGNPIT 526


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 208 LTKSNKTLPSKC 173
           L +SN+ +P KC
Sbjct: 738 LVESNRNVPQKC 749


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 183 QVNAVTHFET*GRLLKFYIYIAFLLIFHTL 94
           ++N + H+++   L K   Y AF +IF  L
Sbjct: 127 EINLLKHYQSTTDLHKKIRYSAFGMIFVAL 156


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 158 SKWVTAFTW*SLIRLRKDFLYLPGV 232
           S W+ A    ++  + ++F YLP +
Sbjct: 47  SAWICALVNYNVSEISENFYYLPAM 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,827
Number of Sequences: 336
Number of extensions: 1314
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6261139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)