Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0414
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    25   2.2  
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    25   3.8  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    23   8.8  

>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 242 IHSLIIAQKKKKKNSRGGPVP 304
           +H+L+ AQ K+  +++ GPVP
Sbjct: 315 LHALLSAQDKETTSTKPGPVP 335


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 310 RIGYRAPPRVFFFFFLCNYE*MNLWPNTW 224
           R G+ + PRVF+ F +  +E + L+PN +
Sbjct: 101 RKGFFSSPRVFWTFKVFGHEHVFLFPNAF 129


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +3

Query: 144 IYLTSQSG*RHLLGKVLLDFVRIFCTYQVLGHKF 245
           +Y+   S  +H + + L+ +  +  TY V+ ++F
Sbjct: 471 VYIHHGSSKKHKIAEQLMSYDIVLTTYNVIAYEF 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,247,983
Number of Sequences: 5004
Number of extensions: 20737
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)