Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0414
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    29   0.79 
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    29   0.79 
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    27   2.4  
L15188-3|AAA27948.2|  348|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AF038611-1|AAB92038.2|  136|Caenorhabditis elegans Hypothetical ...    25   9.7  

>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 316 IGRIGYRAPPRVFFFFFLCNY 254
           IG  G+ APP VF FFF   Y
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGY 368


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 316 IGRIGYRAPPRVFFFFFLCNY 254
           IG  G+ APP VF FFF   Y
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGY 366


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 325 RLTIGRIGYRAPPRVFFFFFLCNYE*MNLWPN 230
           R  IG++GYR    +F  F++       LWP+
Sbjct: 360 RRKIGKLGYRRKEELFLVFYMIFNSNKPLWPS 391


>L15188-3|AAA27948.2|  348|Caenorhabditis elegans Hypothetical
           protein C14B9.3 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 83  PQLISIIELVVLGQVIFYWPDCKPLYV 3
           P ++++ EL V+G V+F +  C P+ +
Sbjct: 120 PSILNLFELNVIGNVLFRYAVCIPIVI 146


>AF038611-1|AAB92038.2|  136|Caenorhabditis elegans Hypothetical
           protein E04A4.3 protein.
          Length = 136

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 146 LPHVSKWVTAFTW*SLIRLRKDFLYLPGVRP*IHSLIIAQKKKKKNSR 289
           +   +KW T F W  +IR +K   Y+   +  I  L + ++ KK   R
Sbjct: 1   MDETAKWFTCFEWEQVIREKK---YIEATQVTIRELEMLKEDKKLTLR 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,856,254
Number of Sequences: 27780
Number of extensions: 113844
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)