Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0412
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual     213   2e-56
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    26   6.4  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   6.4  
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    25   8.5  

>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score =  213 bits (520), Expect = 2e-56
 Identities = 96/175 (54%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
 Frame = +3

Query: 12  CKCNVFRWRYDDKVVISDIDGTITKSDVLGHIFPMVGKDWAQSGVAQLFTKIKNNGYQLL 191
           C  N+F W+++D VVISDIDGTITKSD LGH+F ++GKDW  +GVA+L+T I NNGY+++
Sbjct: 366 CTANLFFWKHNDPVVISDIDGTITKSDALGHMFTLIGKDWTHAGVAKLYTDITNNGYKIM 425

Query: 192 YLSARAIGQAKVTREYLRSIRQGEVCLPDGPLLLNPTSLLRAFHREVIEKKPEEFKIQCL 371
           YL++R++GQA  TR YLR+I Q    LPDGP++L+P   + A HREVI +KPE FK+ CL
Sbjct: 426 YLTSRSVGQADSTRHYLRNIEQNGYSLPDGPVILSPDRTMAALHREVILRKPEVFKMACL 485

Query: 372 ADIKALF--PQGSNPFYAGYGNRVNDVCAYQAVGIPIVRIFTINYKGELKHELTQ 530
            D+  +F  P    PFYAG+GNR+ D  +Y  V +P  RIFTIN  GE+  EL Q
Sbjct: 486 RDLCNIFALPVPRTPFYAGFGNRITDAISYNHVRVPPTRIFTINSAGEVHIELLQ 540



 Score = 35.1 bits (77), Expect = 0.011
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 541 STYSHMSVLVDQVFPPAQCEPSDE---FSQTVYWRDPL 645
           S+Y +M+ LVD  FPP +    DE   F+   +WR PL
Sbjct: 546 SSYVYMNELVDHFFPPIEVSTRDEVSSFTDVNFWRSPL 583


>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -3

Query: 473 RNTDSLICTNVIHSIPI---ASVKWIRPLREQR 384
           +  DS+ICTN++ +I +   A ++W R    +R
Sbjct: 97  KEIDSIICTNLVSAIKLSKMAILEWFRNKNSER 129


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 264 VCLPDGPLLLNPTSLLRAFHREVIEKKPEEFK 359
           V LP  P+LL P         EV+++  E+++
Sbjct: 177 VALPQAPVLLWPAEFGMVIEEEVVDRTKEDYE 208


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 21/79 (26%), Positives = 33/79 (41%)
 Frame = +2

Query: 95  TGSYIPNGRQRLGPVWGRSTIHEDKEQRISTALSVGQGYRTSQSDSGISALNQTRRGVST 274
           +G   P G +   PV   S   ED++   + A S+G G  T++S    S+      GV+ 
Sbjct: 275 SGRKNPLGAKSQKPVEAMS---EDEQMHKAIAASLGNGNSTTESQGESSSQQAESHGVAD 331

Query: 275 GRAAAAESYIVASRLPSRG 331
                 +S    +  PS G
Sbjct: 332 DTVHKIDSAECDAEEPSPG 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,822
Number of Sequences: 5004
Number of extensions: 61055
Number of successful extensions: 196
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)