Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0412
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 210 7e-55
05_05_0125 - 22561972-22562028,22562318-22562416,22562496-225626... 208 4e-54
01_06_0009 - 25535480-25535529,25536225-25536252,25536427-255364... 43 2e-04
08_01_0695 + 6148873-6150051 32 0.55
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 31 1.3
02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243 29 2.9
07_03_1275 + 25382959-25383765,25383850-25384050,25384693-253848... 29 3.9
12_02_1013 + 25305531-25305611,25305793-25305861,25306115-253062... 29 5.1
06_01_0465 - 3304417-3306834 28 6.7
06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985... 28 8.9
03_05_1016 + 29726949-29727503,29728863-29729504 28 8.9
>11_06_0388 + 23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 210 bits (514), Expect = 7e-55
Identities = 94/164 (57%), Positives = 126/164 (76%)
Frame = +3
Query: 21 NVFRWRYDDKVVISDIDGTITKSDVLGHIFPMVGKDWAQSGVAQLFTKIKNNGYQLLYLS 200
+++ W+++ ++VISD+DGTITKSDVLG P+VG DW+Q+GVA LF+ IK NGYQLL+LS
Sbjct: 1175 HIYLWKWNARIVISDVDGTITKSDVLGQFMPLVGVDWSQNGVAHLFSAIKENGYQLLFLS 1234
Query: 201 ARAIGQAKVTREYLRSIRQGEVCLPDGPLLLNPTSLLRAFHREVIEKKPEEFKIQCLADI 380
ARAI QA +TR++L +++Q LPDGP++++P L + +REVI + P EFKI CL I
Sbjct: 1235 ARAISQAHLTRQFLFNLKQDGKALPDGPVVISPDGLFPSLYREVIRRAPHEFKISCLGAI 1294
Query: 381 KALFPQGSNPFYAGYGNRVNDVCAYQAVGIPIVRIFTINYKGEL 512
KALFP SNPFYAG+GNR D +Y VGIP+ +IF IN KGE+
Sbjct: 1295 KALFPPDSNPFYAGFGNRDTDELSYLKVGIPMGKIFIINPKGEV 1338
Score = 36.3 bits (80), Expect = 0.025
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 529 RHSSSTYSHMSVLVDQVFPPAQCEPSDE-FSQTVYWRDPLPAVDL 660
R + +Y+ + LV+ +FPP E ++ YW+ PLPAVD+
Sbjct: 1343 RVDTKSYTSLHALVNGMFPPISTSSEQEDYNTWNYWKMPLPAVDI 1387
>05_05_0125 - 22561972-22562028,22562318-22562416,22562496-22562624,
22563312-22563355,22563570-22563642,22563791-22563877,
22563985-22564069,22565460-22565533,22565612-22566192,
22566275-22568270
Length = 1074
Score = 208 bits (508), Expect = 4e-54
Identities = 92/166 (55%), Positives = 129/166 (77%)
Frame = +3
Query: 15 KCNVFRWRYDDKVVISDIDGTITKSDVLGHIFPMVGKDWAQSGVAQLFTKIKNNGYQLLY 194
+ +++ W+++ K+VISD+DGTIT+SDVLG + P+VG+DW+QSGVA+LF+ IK NGYQLL+
Sbjct: 861 EAHIYLWKWNAKIVISDVDGTITRSDVLGQVMPLVGRDWSQSGVARLFSAIKENGYQLLF 920
Query: 195 LSARAIGQAKVTREYLRSIRQGEVCLPDGPLLLNPTSLLRAFHREVIEKKPEEFKIQCLA 374
LSARAI QA +T+ +L +++Q LP+GP++++P L + +REVI + P EFKI CL
Sbjct: 921 LSARAIVQAYLTKNFLFNLKQDGKVLPNGPVVISPDGLFPSLYREVIRRAPHEFKIACLE 980
Query: 375 DIKALFPQGSNPFYAGYGNRVNDVCAYQAVGIPIVRIFTINYKGEL 512
DIKALFP NPFYAG+GNR D +Y+ +GIP +IF IN KGE+
Sbjct: 981 DIKALFPSDYNPFYAGFGNRDTDELSYKKMGIPKGKIFIINPKGEV 1026
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 544 TYSHMSVLVDQVFPPAQCEPSDEFSQTVYWRDPLPAVDL 660
+Y+ + LV +FPP ++++ YW+ PLP VDL
Sbjct: 1036 SYTSLHTLVHDMFPPTTLVEQEDYNSWNYWKMPLPDVDL 1074
>01_06_0009 -
25535480-25535529,25536225-25536252,25536427-25536496,
25537020-25537063,25538064-25538228,25538411-25538491,
25539224-25540258
Length = 490
Score = 43.2 bits (97), Expect = 2e-04
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Frame = +3
Query: 174 NGYQLLYLSARAIGQAKVTREYLRSIRQGEVCLPDGPLLLNPTSLLRAFHREVIEKKPEE 353
NGYQLL+LSA I QA +T+ +L +++Q LP+GP++++P R+V +
Sbjct: 347 NGYQLLFLSA--IIQAYLTKNFLFNLKQDGKVLPNGPVVISPDVYFLHCTRKVASSL--Q 402
Query: 354 FKIQCLADIKALFPQGSNPFYAG---YGN----------RVNDVCAYQAVGIPIVRIFTI 494
+ DI +P P G Y R D +Y+ +GIP +IF I
Sbjct: 403 YLHILDDDILHYYPLAKTPKSGGDRLYEEHHMSLRLHVWRDTDKLSYKKMGIPKGKIFII 462
Query: 495 NYKGEL 512
N K L
Sbjct: 463 NPKVSL 468
>08_01_0695 + 6148873-6150051
Length = 392
Score = 31.9 bits (69), Expect = 0.55
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 243 RSIRQGEVCLPDGPLLLNPTSL 308
RSIR+GEV L + PLLL P SL
Sbjct: 22 RSIREGEVILTEQPLLLYPASL 43
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 175 TDINCSICR-PGLSDKPK*LGNICAQSDKARCVYRTGRCC*IL 300
TD+ CS+C+ P +++K + Q++ V RTGRCC +L
Sbjct: 191 TDVVCSVCKLPDVAEK------VIKQAEHRYGVSRTGRCCELL 227
>02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243
Length = 523
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +3
Query: 417 AGYGNRVNDVCAYQAVG 467
AGY N V D CAY AVG
Sbjct: 320 AGYENAVGDTCAYAAVG 336
>07_03_1275 +
25382959-25383765,25383850-25384050,25384693-25384888,
25385583-25385767
Length = 462
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 264 VCLPDGPLLLNPTSLLRAFHREVIEKKPEEF 356
VC+P P LL +L + +REV++ P E+
Sbjct: 119 VCVPSAPPLLETNALQYSAYREVLQADPPEW 149
>12_02_1013 +
25305531-25305611,25305793-25305861,25306115-25306208,
25306292-25306396,25306577-25306660,25306793-25306866,
25307936-25308001,25308892-25308948,25309433-25309477,
25309602-25309655,25310097-25310237
Length = 289
Score = 28.7 bits (61), Expect = 5.1
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +3
Query: 144 VAQLFTKIKNNGYQLLYLSARAIG-QAKV-TREYLRSIRQGEVCLPDGPLLLNPTSLLRA 317
V Q+ K+++ L+Y+ +G + K+ + L S+ Q +V + L+ LL
Sbjct: 128 VLQVVDKLRSVNPDLVYVCDPVLGDEGKLYVPQDLISVYQQKVVITSA--LIEDKLLLIG 185
Query: 318 FHREVIEKKPEEFKIQCLADIKALF 392
H++ E+ PE+FKI+ + I A F
Sbjct: 186 SHKKAKEQPPEQFKIE-IPKIPAYF 209
>06_01_0465 - 3304417-3306834
Length = 805
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -1
Query: 448 QTSFTLFP*PA*NGLDP*GNSALISARH*ILNSSGFFSMTSRWKARSNDVG 296
+TS +P PA D G + S+RH +L+S G+F T + ++D G
Sbjct: 201 ETSSIYWPNPAFLSWDN-GRTTYYSSRHGVLDSDGWFIATDQLNFEASDHG 250
>06_01_1159 -
9852316-9852441,9852743-9852838,9852912-9852977,
9853091-9853180,9853262-9853373,9853515-9853598,
9853864-9853940,9854823-9854873,9854924-9855031,
9855703-9855774,9856952-9857011,9857808-9857876,
9858005-9858088,9858212-9858295,9859106-9859198,
9859930-9860030,9861155-9861264,9863058-9863104,
9863693-9863778,9863940-9864012,9864454-9864540,
9864650-9865301,9866164-9867182,9867702-9867797
Length = 1180
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +3
Query: 39 YDDKVVISDI---DGTITKSDVLGHIFPMVGKDWAQSGVAQLFTKIKN 173
+D+++V + I DG D+L + G+++A G+ + F K+KN
Sbjct: 661 HDNRIVANSIFISDGAA--EDILSLVKQRYGEEYASEGIRKYFKKVKN 706
>03_05_1016 + 29726949-29727503,29728863-29729504
Length = 398
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 213 GQAKVTREYLRSIRQGEVCLPDG 281
G+ +T E+LR +++G CL +G
Sbjct: 344 GRGDITEEFLRRVQEGRTCLYNG 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,124,627
Number of Sequences: 37544
Number of extensions: 430216
Number of successful extensions: 1205
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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