BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0412 (739 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_57245| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 1e-09 SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0) 34 0.10 >SB_57245| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 400 Score = 60.9 bits (141), Expect = 1e-09 Identities = 27/39 (69%), Positives = 31/39 (79%) Frame = +3 Query: 324 REVIEKKPEEFKIQCLADIKALFPQGSNPFYAGYGNRVN 440 REVIEKKPEEFKI L DI +LFP NPFY G+GN++N Sbjct: 285 REVIEKKPEEFKISALRDILSLFP-NKNPFYGGFGNKIN 322 Score = 39.5 bits (88), Expect = 0.003 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 10/50 (20%) Frame = +1 Query: 541 STYSHMSVLVDQVFPPAQCEPS----------DEFSQTVYWRDPLPAVDL 660 S+Y +S LVDQ+FPP + + DEFS YWR+PLP V++ Sbjct: 335 SSYLRLSDLVDQMFPPYKKQQDSMRPTGLVAPDEFSSFTYWRNPLPHVEI 384 >SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0) Length = 1589 Score = 34.3 bits (75), Expect = 0.10 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = +1 Query: 334 LRRNQKNSKFSVSPISRRCSLKGLIHFTLAMGIE*MTFVHIKLSVF 471 LR + N + S+ + +CS K L HF++ G+ M FVH +F Sbjct: 1365 LRLFRFNKRMSLLATTLKCSAKELAHFSIVFGLVFMAFVHFCYLIF 1410 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,782,746 Number of Sequences: 59808 Number of extensions: 489084 Number of successful extensions: 1213 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1211 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1986074805 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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