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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0412
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57245| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   1e-09
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)                 34   0.10 

>SB_57245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 27/39 (69%), Positives = 31/39 (79%)
 Frame = +3

Query: 324 REVIEKKPEEFKIQCLADIKALFPQGSNPFYAGYGNRVN 440
           REVIEKKPEEFKI  L DI +LFP   NPFY G+GN++N
Sbjct: 285 REVIEKKPEEFKISALRDILSLFP-NKNPFYGGFGNKIN 322



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 10/50 (20%)
 Frame = +1

Query: 541 STYSHMSVLVDQVFPPAQCEPS----------DEFSQTVYWRDPLPAVDL 660
           S+Y  +S LVDQ+FPP + +            DEFS   YWR+PLP V++
Sbjct: 335 SSYLRLSDLVDQMFPPYKKQQDSMRPTGLVAPDEFSSFTYWRNPLPHVEI 384


>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1589

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 334  LRRNQKNSKFSVSPISRRCSLKGLIHFTLAMGIE*MTFVHIKLSVF 471
            LR  + N + S+   + +CS K L HF++  G+  M FVH    +F
Sbjct: 1365 LRLFRFNKRMSLLATTLKCSAKELAHFSIVFGLVFMAFVHFCYLIF 1410


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,782,746
Number of Sequences: 59808
Number of extensions: 489084
Number of successful extensions: 1213
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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