Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0412
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.74 
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   5.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +1

Query: 565 LVDQVFPPAQCEPSDEFSQTVYWRDPLPAV 654
           L+   +    C+P+      + WR P PA+
Sbjct: 15  LLSNAYKQGFCQPTQRTMSKIQWRKPKPAM 44


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -3

Query: 494 YGENSYNRNTDSLICTNVIH--SIPI 423
           Y  ++YN N    +C N+ H   IP+
Sbjct: 89  YNYSNYNNNNYKQLCYNINHIEQIPV 114


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 179 ISTALSVGQGYRTSQS 226
           +ST  ++ QG+RT++S
Sbjct: 275 VSTTKAINQGFRTTKS 290


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 186 LLYLSARAIGQAKVTREYLRSI 251
           LLY  AR + Q   ++EYL SI
Sbjct: 219 LLYNHARLMSQDNHSKEYLVSI 240


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = -1

Query: 577 PGPPALTYGNTWNWNVCVSSC 515
           PG  A+ +   W WN     C
Sbjct: 28  PGHDAIVHLFEWKWNDIAKEC 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,383
Number of Sequences: 438
Number of extensions: 4218
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)