Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0412
(739 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09560.2 68416.m01136 lipin family protein contains Pfam prof... 215 3e-56
At3g09560.1 68416.m01135 lipin family protein contains Pfam prof... 215 3e-56
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof... 202 3e-52
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa... 30 1.8
At5g37200.1 68418.m04466 zinc finger (C3HC4-type RING finger) fa... 29 4.3
At3g09760.1 68416.m01156 zinc finger (C3HC4-type RING finger) fa... 29 4.3
At5g01400.1 68418.m00053 expressed protein contains low similari... 28 7.4
At4g01350.1 68417.m00175 DC1 domain-containing protein contains ... 27 9.8
At3g45755.1 68416.m04945 hypothetical protein 27 9.8
>At3g09560.2 68416.m01136 lipin family protein contains Pfam profile:
PF04571 lipin, N-terminal conserved region
Length = 904
Score = 215 bits (524), Expect = 3e-56
Identities = 97/170 (57%), Positives = 126/170 (74%)
Frame = +3
Query: 3 TTRCKCNVFRWRYDDKVVISDIDGTITKSDVLGHIFPMVGKDWAQSGVAQLFTKIKNNGY 182
T + +++RWR+D K+VISD+DGTITKSDVLG P +GKDW QSGVA+LF+ IK NGY
Sbjct: 687 TQQVDAHIYRWRWDTKIVISDVDGTITKSDVLGQFMPFIGKDWTQSGVAKLFSAIKENGY 746
Query: 183 QLLYLSARAIGQAKVTREYLRSIRQGEVCLPDGPLLLNPTSLLRAFHREVIEKKPEEFKI 362
QLL+LSARAI QA +TR +L +++Q LP GP++++P L A +REVI + P EFKI
Sbjct: 747 QLLFLSARAIVQAYLTRNFLNNLKQDGKALPTGPVVISPDGLFPALYREVIRRAPHEFKI 806
Query: 363 QCLADIKALFPQGSNPFYAGYGNRVNDVCAYQAVGIPIVRIFTINYKGEL 512
CL DI+ LFP NPFYAG+GNR D +Y+ +GIP +IF IN KGE+
Sbjct: 807 ACLEDIRKLFPTDYNPFYAGFGNRDTDELSYRKLGIPKGKIFIINPKGEV 856
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = +1
Query: 544 TYSHMSVLVDQVFPPAQCEPSDEFSQTVYWRDPLPAVD 657
+Y+ + LV+ +FPP ++++ +W+ P+ V+
Sbjct: 867 SYTSLHTLVNDMFPPTSLVEQEDYNPWNFWKLPIEEVE 904
>At3g09560.1 68416.m01135 lipin family protein contains Pfam profile:
PF04571 lipin, N-terminal conserved region
Length = 904
Score = 215 bits (524), Expect = 3e-56
Identities = 97/170 (57%), Positives = 126/170 (74%)
Frame = +3
Query: 3 TTRCKCNVFRWRYDDKVVISDIDGTITKSDVLGHIFPMVGKDWAQSGVAQLFTKIKNNGY 182
T + +++RWR+D K+VISD+DGTITKSDVLG P +GKDW QSGVA+LF+ IK NGY
Sbjct: 687 TQQVDAHIYRWRWDTKIVISDVDGTITKSDVLGQFMPFIGKDWTQSGVAKLFSAIKENGY 746
Query: 183 QLLYLSARAIGQAKVTREYLRSIRQGEVCLPDGPLLLNPTSLLRAFHREVIEKKPEEFKI 362
QLL+LSARAI QA +TR +L +++Q LP GP++++P L A +REVI + P EFKI
Sbjct: 747 QLLFLSARAIVQAYLTRNFLNNLKQDGKALPTGPVVISPDGLFPALYREVIRRAPHEFKI 806
Query: 363 QCLADIKALFPQGSNPFYAGYGNRVNDVCAYQAVGIPIVRIFTINYKGEL 512
CL DI+ LFP NPFYAG+GNR D +Y+ +GIP +IF IN KGE+
Sbjct: 807 ACLEDIRKLFPTDYNPFYAGFGNRDTDELSYRKLGIPKGKIFIINPKGEV 856
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = +1
Query: 544 TYSHMSVLVDQVFPPAQCEPSDEFSQTVYWRDPLPAVD 657
+Y+ + LV+ +FPP ++++ +W+ P+ V+
Sbjct: 867 SYTSLHTLVNDMFPPTSLVEQEDYNPWNFWKLPIEEVE 904
>At5g42870.1 68418.m05225 lipin family protein contains Pfam profile:
PF04571 lipin, N-terminal conserved region
Length = 930
Score = 202 bits (492), Expect = 3e-52
Identities = 88/170 (51%), Positives = 123/170 (72%)
Frame = +3
Query: 3 TTRCKCNVFRWRYDDKVVISDIDGTITKSDVLGHIFPMVGKDWAQSGVAQLFTKIKNNGY 182
T + ++ W+++ ++V+SD+DGTIT+SDVLG P+VG DW+Q+GV LF+ +K NGY
Sbjct: 714 TQQVDARIYLWKWNSRIVVSDVDGTITRSDVLGQFMPLVGIDWSQTGVTHLFSAVKENGY 773
Query: 183 QLLYLSARAIGQAKVTREYLRSIRQGEVCLPDGPLLLNPTSLLRAFHREVIEKKPEEFKI 362
QL++LSARAI QA VTR++L +++Q LPDGP++++P L + REVI + P EFKI
Sbjct: 774 QLIFLSARAISQASVTRQFLVNLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKI 833
Query: 363 QCLADIKALFPQGSNPFYAGYGNRVNDVCAYQAVGIPIVRIFTINYKGEL 512
CL +I+ LFP NPFYAG+GNR D +Y VGIP +IF IN KGE+
Sbjct: 834 ACLEEIRGLFPPEHNPFYAGFGNRDTDEISYLKVGIPRGKIFIINPKGEV 883
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = +1
Query: 529 RHSSSTYSHMSVLVDQVFPPAQCEPSDEFSQTVYWRDPLPAV 654
R + +Y+++ LV+++FP ++F+ +W+ P P++
Sbjct: 888 RIDTRSYTNLHTLVNRMFPATSSSEPEDFNTWNFWKLPPPSL 929
>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
family protein predicted proteins, Arabidopsis thaliana
; contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 411
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 351 EFKIQCLADIKALFPQGSNPFYAGYGNRVNDVCAYQAVGIPIV--RIFTINYKGELKHEL 524
+ + C D++ + + +++ G R+ DVC + +P++ R+ TIN + EL
Sbjct: 217 KMECSCKGDLRLVHEHCAIKWFSTKGTRICDVCRQEVRNLPVILLRVPTINQLTN-RREL 275
Query: 525 TQ 530
TQ
Sbjct: 276 TQ 277
>At5g37200.1 68418.m04466 zinc finger (C3HC4-type RING finger)
family protein low similarity to ring-H2 finger protein
RHY1a from Arabidopsis thaliana [gi:3790593], ring
finger-H2 protein from Xenopus laevis [gi:13752371];
contains Pfam domain zinc finger, C3HC4 type (RING
finger) PF00097
Length = 217
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 192 YLSARAIGQAKVTREYLRSIRQGEVCLPDGPLLLNPTSLLRAFHREVIEKKPEEFKIQ 365
+ + ++ Q Y+ I++ V P GP LL+ + FHR V E++ E ++
Sbjct: 96 FANDNSLRQPVTVTVYVTYIKERRVIFPHGPSLLSRGASGEVFHRLVEEQRVESADLE 153
>At3g09760.1 68416.m01156 zinc finger (C3HC4-type RING finger)
family protein ; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 491
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 348 EEFKIQCLA--DIKALFPQGSNPFYAGYGNRVNDVCAYQAVGIPIVRIFTINYKGEL 512
E FK++CL ++ + + ++ GNR DVC + +P+ + N +G +
Sbjct: 278 EAFKMECLCRGELALAHKECTIKWFTIKGNRTCDVCKQEVQNLPVTLLRMQNSRGSI 334
>At5g01400.1 68418.m00053 expressed protein contains low similarity to
symplekin SP:Q92797 from [Homo sapiens]
Length = 1467
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 143 GRSTIHEDKEQRISTALSVGQGYRTSQSDSGISALNQTRRG-VSTGRAAAAES 298
GRS + + + I T S + S D+G S ++Q++ + TGR+ +ES
Sbjct: 1327 GRSEMSQSQNSPIDTGRSEMSQSQNSPIDTGRSEMSQSQNSPIDTGRSEMSES 1379
>At4g01350.1 68417.m00175 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 632 QYTVCENSSLGSHCAGGNTWSTSTDIWEYVELE 534
QY + S+ H A +T + TD+W+ VELE
Sbjct: 315 QYKGAYSCSVCPHYAVHSTCAVRTDVWDGVELE 347
>At3g45755.1 68416.m04945 hypothetical protein
Length = 296
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 89 GRTGSYIPNGRQRLGPVWGRSTIHEDKEQ 175
GRT SY+ G GPVW S I E+K +
Sbjct: 272 GRTRSYLSRG----GPVWLSSRIEEEKRR 296
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,696,355
Number of Sequences: 28952
Number of extensions: 332903
Number of successful extensions: 940
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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