Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0411
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    82   6e-17
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    45   1e-05
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy...    41   1e-04
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces...    39   7e-04
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    36   0.004
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    33   0.036
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    31   0.11 
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    31   0.15 
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    31   0.19 
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...    29   0.59 
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch...    28   1.0  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    27   3.1  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    27   3.1  
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    27   3.1  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   4.1  

>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 38/70 (54%), Positives = 53/70 (75%)
 Frame = +2

Query: 194 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 373
           +DKCIGS + +IMK+++E  GTL GFDD+VN++L DVTEY+ T  G    K  ++LLNGN
Sbjct: 11  IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTG-VTEKHSEMLLNGN 68

Query: 374 NIAMLVPGGE 403
            + ML+PGG+
Sbjct: 69  GMCMLIPGGK 78


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
 Frame = +2

Query: 215 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKIT----KLDQILLNGNNIA 382
           RI       +++ G L+GFD  +N++LDDV E    PE  K+T    KL  +++ G  + 
Sbjct: 35  RIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLV 94

Query: 383 MLVP 394
           ++ P
Sbjct: 95  LIAP 98


>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 84

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 19/57 (33%), Positives = 36/57 (63%)
 Frame = +2

Query: 218 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 388
           I +  + D  + G ++GFD+F+N++LDD  + ++    R   +L +ILL G+NI ++
Sbjct: 28  IWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKNNKR---ELGRILLKGDNITLI 81


>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 77

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 16/63 (25%), Positives = 38/63 (60%)
 Frame = +2

Query: 200 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 379
           K +  ++ + +   +++ G L+G+D F+N++L+D    E   +G K+ K+  + + GN++
Sbjct: 11  KYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLED--SIEEKVDGEKV-KIGSVAIRGNSV 67

Query: 380 AML 388
            M+
Sbjct: 68  IMI 70


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = +2

Query: 209 GSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 388
           G  I + +KN +   G L+  D+++N+ L +V    + P+G K  +L +  + GNNI  L
Sbjct: 12  GRPILVELKNGETFNGHLENCDNYMNLTLREVIR--TMPDGDKFFRLPECYIRGNNIKYL 69


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +2

Query: 254 GTLQGFDDFVNMLLDDVTEYESTPE---GRKITKLDQILLNGNNIAMLVPGGEMPGESYD 424
           GT +  D+F+  +L  +T  E TP+     KIT+  ++ L   N A+++ GG   G ++ 
Sbjct: 95  GTKKLIDEFIQEVLMCLTYLEETPDLSLDEKITEFSRLKLTTGNTALILSGGGTFGMTHI 154

Query: 425 G 427
           G
Sbjct: 155 G 155


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 218 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY 313
           +++  K+ +  VG L  FD F+N++L D  EY
Sbjct: 14  LNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEY 45


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = +2

Query: 206 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 310
           +  ++ +++++ K+++G L+ FD F N++L    E
Sbjct: 20  VDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIE 54


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +2

Query: 218 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 310
           +++ ++ D+E+ G L  +D+ +NM+L D  E
Sbjct: 22  VYVKLRGDRELNGRLHAYDEHLNMVLGDAEE 52


>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 10/69 (14%)
 Frame = +2

Query: 215 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK---ITK---LDQILL 364
           ++ I  +N+K+++  ++ FD   NM+L++V    TE + T  G+K   I K   + ++ L
Sbjct: 42  QVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGKKGKAINKDRFISKMFL 101

Query: 365 NGNNIAMLV 391
            G+ + ++V
Sbjct: 102 RGDGVVLVV 110


>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 96

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = +2

Query: 206 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYEST 322
           I + + + +KND  + G L+  D F+N+ L++++  +++
Sbjct: 11  IDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDAS 49


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 85  QVDCHYSK*IPRNLRTQKKNDAKFITES 168
           Q +CHYSK + R+    KK +   + ES
Sbjct: 35  QEECHYSKRLKRSYSATKKKNGNPVLES 62


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 145 HFFSAYEDFVEFIYCNDNQLVDYLIS*SIVL 53
           + FS  E +   + C DNQ   YLIS + VL
Sbjct: 126 NLFSIIEQYDVVLDCTDNQYTRYLISDTCVL 156


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +2

Query: 200 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 379
           K     + I +KN   + GT+   D  +N  L  V   + T +GR+   ++ + + GNNI
Sbjct: 9   KLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAV---KMTVKGREPVPVETLSIRGNNI 65

Query: 380 AMLVPGGEMP 409
              +    +P
Sbjct: 66  RYYILPDSLP 75


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +2

Query: 206 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRK 337
           IGSRI +I K+D   VG LQ  +   + L      +  T EGRK
Sbjct: 5   IGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGT-EGRK 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,455
Number of Sequences: 5004
Number of extensions: 51520
Number of successful extensions: 98
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)