Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0411
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...   120   1e-27
AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G ...    40   0.001
AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear...    40   0.001
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    40   0.002
Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical p...    39   0.003
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    39   0.004
Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical pr...    34   0.077
Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical pr...    34   0.10 
U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...    33   0.13 
AF125954-2|AAK68175.1|  193|Caenorhabditis elegans Hypothetical ...    32   0.31 
Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical pr...    32   0.41 
Z81104-9|CAB70252.3|  488|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score =  120 bits (288), Expect = 1e-27
 Identities = 52/72 (72%), Positives = 65/72 (90%)
 Frame = +2

Query: 194 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 373
           +DKCIGS+I +IMKNDKE+VGTL GFDD+VNM+L+DV EYE+T +G+++TKLD ILLNGN
Sbjct: 18  IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGN 77

Query: 374 NIAMLVPGGEMP 409
           +I MLVPGGE P
Sbjct: 78  HITMLVPGGEGP 89


>AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G
           protein.
          Length = 77

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/65 (26%), Positives = 38/65 (58%)
 Frame = +2

Query: 200 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 379
           K +   + + +  ++ + G L+GFD F+NM++D+  EY+   +G  +  L   ++ GN++
Sbjct: 11  KYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK--DGGSV-NLGMTVIRGNSV 67

Query: 380 AMLVP 394
            ++ P
Sbjct: 68  VIMEP 72


>AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 7 protein.
          Length = 77

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/65 (26%), Positives = 38/65 (58%)
 Frame = +2

Query: 200 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 379
           K +   + + +  ++ + G L+GFD F+NM++D+  EY+   +G  +  L   ++ GN++
Sbjct: 11  KYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK--DGGSV-NLGMTVIRGNSV 67

Query: 380 AMLVP 394
            ++ P
Sbjct: 68  VIMEP 72


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/41 (39%), Positives = 28/41 (68%)
 Frame = +2

Query: 206 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 328
           +  R+++ M+ND+E+ G L+ FD  +NM+L +V E  +T E
Sbjct: 25  LDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTRE 65


>Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical
           protein Y49E10.15 protein.
          Length = 90

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
 Frame = +2

Query: 212 SRIHIIMKND--KEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 385
           +R+ I +  D    + G + GFD+F+N++ D+  E     +GR   K+ +ILL G+NI +
Sbjct: 25  TRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKGR--NKIGRILLKGDNITL 82

Query: 386 L 388
           +
Sbjct: 83  I 83


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +2

Query: 206 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE-----GRKITKLDQILLNG 370
           +   I +  +  +E  G L+GFD  +NM+LDD  EY   P+     G +  +L  I+  G
Sbjct: 20  LDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLIVARG 79

Query: 371 NNIAMLVP 394
             I ++ P
Sbjct: 80  TAITVVSP 87


>Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical
           protein F40F8.9 protein.
          Length = 125

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 13/60 (21%), Positives = 34/60 (56%)
 Frame = +2

Query: 206 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 385
           +  ++ +++++ ++++G L+  D F N++L+DV E     +    T    +L+ G N+ +
Sbjct: 18  LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQGFMLIRGENVEL 77


>Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical
           protein T10G3.6 protein.
          Length = 97

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 206 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVT 307
           +G  + + +KND  + GTL   D ++NM L D+T
Sbjct: 11  VGKDVVVELKNDLSICGTLHSVDQYLNMKLTDIT 44


>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 18/58 (31%), Positives = 33/58 (56%)
 Frame = +2

Query: 218 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLV 391
           ++I +KN  ++ GT+ G D  +N  L  V+    T + ++  KLD + + GNNI  ++
Sbjct: 15  VNIELKNGTQVSGTIMGVDVAMNTHLRAVS---MTVKNKEPVKLDTLSIRGNNIRYII 69


>AF125954-2|AAK68175.1|  193|Caenorhabditis elegans Hypothetical
           protein C13B7.6 protein.
          Length = 193

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +3

Query: 114 STKSSYAEKK*RKVHYRIQTRYCLWNLLTNALVPAFIS**KTTKKWLEL 260
           S  +S  EK  +KVH +I  R C   +L  +LVP  I   K+ KK L+L
Sbjct: 125 SVTNSAPEKIQKKVHVKIMPRKCAPQILRRSLVPPPILTPKSAKKKLKL 173


>Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical
           protein C52E4.3 protein.
          Length = 118

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 11/70 (15%)
 Frame = +2

Query: 215 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRKITK-------LDQIL 361
           ++ I  +N+K+++G ++ FD   NM+L++V    TE   T +G+K  K       + ++ 
Sbjct: 41  QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMF 100

Query: 362 LNGNNIAMLV 391
           L G+++ ++V
Sbjct: 101 LRGDSVILVV 110


>Z81104-9|CAB70252.3|  488|Caenorhabditis elegans Hypothetical
           protein M199.2 protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 308 EYESTPEGRKITKLDQILLNGNNIAMLVPGGEMPGESYD 424
           EY STP   K T   + LL    + M +P G    E YD
Sbjct: 172 EYNSTPIAPKPTTSSKPLLQATKLGMWLPIGFAASELYD 210


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
            F20C5.2b protein.
          Length = 1130

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 288  MFTKSSNPCRVPTISLSF--FIMI*MREPMHLSTSSRGSNVFGFGNELC 148
            + TKS +  R   I + F  F++        LST  RG+ V+G G +LC
Sbjct: 858  LMTKSLHAPRKFGIFMKFQKFLVDFQNYDRSLSTPQRGATVYGSGEQLC 906


>Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical
           protein T24C2.4 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 257 TLQGFDDFVNMLLD-DVTEYESTPEGRKITKLDQI-LLNGNNIAMLV 391
           TL GFDD+V ++LD    EY    EG  +   + + L+    I  LV
Sbjct: 69  TLNGFDDYVKLVLDGKCLEYTDMYEGCLVKHKNTLKLIRDTTILQLV 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,731,013
Number of Sequences: 27780
Number of extensions: 299254
Number of successful extensions: 660
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)