Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0411
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 116 1e-26
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 42 3e-04
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 41 6e-04
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 39 0.003
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 38 0.004
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 38 0.004
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 38 0.006
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 38 0.006
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 38 0.006
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 38 0.006
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 33 0.17
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 33 0.17
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati... 33 0.17
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati... 33 0.17
At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7) c... 31 0.88
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 30 1.2
At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2, put... 29 2.0
At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2, put... 29 2.0
At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2, put... 29 2.0
At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2, put... 29 2.0
At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D, puta... 28 4.7
At5g63930.1 68418.m08028 leucine-rich repeat transmembrane prote... 28 6.2
At1g07110.1 68414.m00756 fructose-6-phosphate 2-kinase / fructos... 28 6.2
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 116 bits (279), Expect = 1e-26
Identities = 51/69 (73%), Positives = 63/69 (91%)
Frame = +2
Query: 194 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 373
+D+CIGS+I +IMK DKE+VG L+GFD +VNM+L+DVTEYE T EGR++TKLDQILLNGN
Sbjct: 14 IDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGN 73
Query: 374 NIAMLVPGG 400
NIA+LVPGG
Sbjct: 74 NIAILVPGG 82
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/63 (31%), Positives = 38/63 (60%)
Frame = +2
Query: 215 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVP 394
+I + + D + G + GFD+++N++LD+ E + RK L +ILL G+NI +++
Sbjct: 28 QIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRK--PLGRILLKGDNITLMMN 85
Query: 395 GGE 403
G+
Sbjct: 86 AGK 88
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +2
Query: 215 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVP 394
+I + + D + G + GFD+++N++LD+ E RK L +ILL G+NI +++
Sbjct: 28 QIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRK--PLGRILLKGDNITLMMN 85
Query: 395 GGE 403
G+
Sbjct: 86 TGK 88
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/60 (30%), Positives = 36/60 (60%)
Frame = +2
Query: 200 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 379
K + ++ I + ++ +VGTL+GFD F+N+++D+ E G T + +++ GN+I
Sbjct: 12 KYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV----NGDDKTDIGMVVIRGNSI 67
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/60 (28%), Positives = 35/60 (58%)
Frame = +2
Query: 200 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 379
K + ++ I + ++ + GTL+GFD F+N+++D+ E G T + +++ GN+I
Sbjct: 12 KYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVIRGNSI 67
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +2
Query: 206 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 328
I RI++ +++D+E+ G L FD +NM+L DV E +T E
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 37.9 bits (84), Expect = 0.006
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Frame = +2
Query: 206 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTP--EGRKITK-------LDQI 358
I R+ + +++ +++VG FD +N++L D E+ P +G+KI + L +
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLGLV 72
Query: 359 LLNGNN-IAMLVPGGEMPGES 418
LL G I+M V G P ES
Sbjct: 73 LLRGEEVISMTVEGPPPPEES 93
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 37.9 bits (84), Expect = 0.006
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Frame = +2
Query: 206 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTP--EGRKITK-------LDQI 358
I R+ + +++ +++VG FD +N++L D E+ P +G+KI + L +
Sbjct: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLGLV 72
Query: 359 LLNGNN-IAMLVPGGEMPGES 418
LL G I+M V G P ES
Sbjct: 73 LLRGEEVISMTVEGPPPPEES 93
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +2
Query: 206 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 328
+ RI++ +++D+E+ G L FD +NM+L DV E +T E
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +2
Query: 218 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITKLDQILLNGNNIAML 388
I +I + + +VG L+GFD N++LD+ E ST EG + L ++ G+NI ++
Sbjct: 15 ISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVI 72
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = +2
Query: 215 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 388
++ +++++ ++++GTL+ FD F N +L+ E E L ++ G N+ ++
Sbjct: 22 KLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGENVVLI 79
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = +2
Query: 215 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 388
++ +++++ ++++GTL+ FD F N +L+ E E L ++ G N+ ++
Sbjct: 22 KLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGENVVLI 79
>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 33.1 bits (72), Expect = 0.17
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +2
Query: 200 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY 313
K + + + + +++ GTL+G+D +N++LD+ E+
Sbjct: 13 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF 50
>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 33.1 bits (72), Expect = 0.17
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +2
Query: 200 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY 313
K + + + + +++ GTL+G+D +N++LD+ E+
Sbjct: 13 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF 50
>At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7)
contains Pfam profiles: PF05033: Pre-SET motif, PF00856
SET domain; identical to cDNA SUVH7 (SUVH7) GI:13517754
Length = 693
Score = 30.7 bits (66), Expect = 0.88
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 302 HRLVTCLQNHRILVEFQP--FLCRFSL*YECGNQCIC 198
H+ TC+Q + L+ + +CR L YECG C C
Sbjct: 468 HQNCTCVQRNGDLLPYHNNILVCRKPLIYECGGSCPC 504
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/61 (18%), Positives = 33/61 (54%)
Frame = +2
Query: 206 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 385
+ ++ +++++ ++++G L+ FD F N +L++ E + L ++ G N+ +
Sbjct: 19 LDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGENVVL 78
Query: 386 L 388
+
Sbjct: 79 I 79
>At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Frame = +2
Query: 212 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK 337
+++ I +N+++++G ++ FD NM+L++V TE T +G+K
Sbjct: 34 TQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 79
>At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Frame = +2
Query: 212 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK 337
+++ I +N+++++G ++ FD NM+L++V TE T +G+K
Sbjct: 34 TQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 79
>At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Frame = +2
Query: 212 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK 337
+++ I +N+++++G ++ FD NM+L++V TE T +G+K
Sbjct: 34 TQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 79
>At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 109
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Frame = +2
Query: 212 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK 337
+++ I +N+++++G ++ FD NM+L++V TE T +G+K
Sbjct: 35 TQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKK 80
>At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D,
putative / snRNP core SM-like protein, putative / U6
snRNA-associated Sm-like protein, putative similar to
SWISS-PROT:Q9Y333 U6 snRNA-associated Sm-like protein
LSm2 (Small nuclear ribonuclear protein D homolog, G7b,
SnRNP core SM-like protein SM-x5) [Homo sapiens]
Length = 93
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 206 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDD 301
+G + + +KND + GTL D ++N+ L++
Sbjct: 11 VGQEVTVELKNDLAIRGTLHSVDQYLNIKLEN 42
>At5g63930.1 68418.m08028 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1102
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 251 VGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVP 394
+G+L G +N+ + +T E PE + L+ +LLN NN++ +P
Sbjct: 621 LGSLTGLQIALNLSYNKLTG-EIPPELSNLVMLEFLLLNNNNLSGEIP 667
>At1g07110.1 68414.m00756 fructose-6-phosphate 2-kinase /
fructose-2,6-bisphosphatase (F2KP) identical to
fructose-6-phosphate
2-kinase/fructose-2,6-bisphosphatase (F2KP) [Arabidopsis
thaliana] GI:13096098
Length = 744
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 266 GFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVPGGEMPG 412
G DF + L + YE EG I +D + NG I + G +PG
Sbjct: 489 GVRDFRDRLANYEKVYEPVEEGSYIKMIDMVSGNGGQIQVNNISGYLPG 537
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,646,773
Number of Sequences: 28952
Number of extensions: 264574
Number of successful extensions: 645
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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