Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0410
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               54   6e-08
SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.049
SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)                   29   2.5  
SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)                  28   4.3  
SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)         27   7.5  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.9  
SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0)                 27   9.9  

>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
 Frame = +2

Query: 2   VHPVVLFQIVDAYERRN--ADSHRVIGTLLGTSDKGVVEVTNCFCVPHKE-HADQVE--A 166
           VHP+VL  +VD + R        RV+G LLG+  KGV++V NCF VP  E   DQ     
Sbjct: 13  VHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRRKGVLDVANCFAVPFDEDDRDQNVWFL 72

Query: 167 ELNYAMDVYELNRRVN 214
           + +Y  ++Y + ++VN
Sbjct: 73  DHDYLENMYAMFKKVN 88


>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +2

Query: 2   VHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVP-HKEHADQVEAELNY 178
           V  + + +I+   E   +    V G LLG      +E+TNCF  P +K   D+ + ++NY
Sbjct: 20  VDGLTVLKIIKHCEEEGSSGDLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDEDDDDVNY 79

Query: 179 AMDVYELNRRVNSSESIVGWW 241
            M+V    R VN     VGW+
Sbjct: 80  QMEVMRRLRAVNIDHLHVGWY 100


>SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 34.7 bits (76), Expect = 0.049
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 374 CVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKT 487
           CV +GVP   +G MF+ +   +    PE VG+ V Q+T
Sbjct: 27  CVKMGVPGKTEGTMFSQIPCEVKLTGPEKVGVDVLQRT 64



 Score = 31.5 bits (68), Expect = 0.46
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 158 VEAELNYAMDVYELNRRVNSSESIVG 235
           V  EL YA  +YEL+++ N +E IVG
Sbjct: 1   VAVELEYAKSMYELSQKANPNEQIVG 26


>SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)
          Length = 219

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = -2

Query: 227 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHF 48
           Y+    + CS  + PSR  +P R  R +   +R+  W++   +CR  P R   L   ++F
Sbjct: 36  YYNYRHVRCSRSREPSR--IPKRFLRRIHNKSRKLRWVVYHRICRKIP-RSSNLHNYINF 92

Query: 47  DVRMRPQFEIK 15
               R  F+ K
Sbjct: 93  GRLRRRYFDSK 103


>SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 227 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHF 48
           Y+    + CS  + PSR  +P R  R +   +R+  W++   +CR+ P R   L   ++F
Sbjct: 90  YYNYRHVRCSRSREPSR--IPKRFLRRLHNKSRKLRWVVYHRICRNIP-RSSNLHNYINF 146

Query: 47  D-VRMRP 30
             +R RP
Sbjct: 147 GRLRRRP 153


>SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)
          Length = 270

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 322 YSGHFTGWRSNGFTCICL 375
           ++GH   W SNG TC+ L
Sbjct: 201 FNGHTYSWHSNGVTCVLL 218


>SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 313 CPCYSGHFTGWRSNGFTCIC 372
           CPC +G     + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149


>SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 313 CPCYSGHFTGWRSNGFTCIC 372
           CPC +G     + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149


>SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)
          Length = 1224

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 429  MSLSRAMNLRL*VCKCAKRLCLVEVAGQAAWPRARTW 539
            ++L  + +L L    CA  L +   +G  AWPR  TW
Sbjct: 969  IALRYSGDLELARAHCAFALEVYRSSGHCAWPRVATW 1005


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 505 ATSTRHSLLAHLQTYNLRFIARESDIYRSEHATLLS 398
           A  T HSLL+ L   ++   AR  D++   HA  LS
Sbjct: 333 AQETSHSLLSRLAIVHMVHEARGLDVHPKTHARFLS 368


>SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 979

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +2

Query: 104 VVEVTNCFCVPHKEHADQVEAELNYAMDVYELN----RRVNSSESIVG 235
           ++ + +C  + HKEHAD+ E++   A+ ++ LN    R + + E  VG
Sbjct: 706 IIALNSCRVMLHKEHADE-ESDYINAVFLHRLNSFTSREIPAEEKSVG 752


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,947,687
Number of Sequences: 59808
Number of extensions: 425226
Number of successful extensions: 1524
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)