Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0410
(543 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 98 4e-21
AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome r... 68 5e-12
Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL132951-5|CAC44307.1| 426|Caenorhabditis elegans Hypothetical ... 29 2.9
Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu... 28 5.0
Z70286-2|CAA94290.1| 529|Caenorhabditis elegans Hypothetical pr... 27 6.6
U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding pro... 27 6.6
U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein. 27 6.6
AJ582071-1|CAE46541.1| 529|Caenorhabditis elegans flavin monoox... 27 6.6
AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and gl... 27 6.6
AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and gl... 27 6.6
AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical ... 27 6.6
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 97.9 bits (233), Expect = 4e-21
Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 20/181 (11%)
Frame = +2
Query: 2 VHPVVLFQIVDAYERR------NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 163
VHP V +VD + RR N + +GTL+G +KG ++VTNCF +P E D +E
Sbjct: 9 VHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLE 68
Query: 164 AELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECRE--------PVH 319
+ + + ++ + +E VGW+ T +++T+ + H+YY R E P+
Sbjct: 69 IDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDYYVRVITEASARRESPPIV 128
Query: 320 V-TLDTSLAGG---RMGLRAYVCVPLGVPN--GKQGCMFTPVDVTLTCYEPEIVGLQVCQ 481
V T+DT+ +G RM +RAY+ G+P G +F P+ V L + E+V +Q+ +
Sbjct: 129 VLTIDTTFSGDMSKRMPVRAYLRSKAGIPGAAGPHCAIFNPLRVELAAFPGELVAMQLIE 188
Query: 482 K 484
K
Sbjct: 189 K 189
>AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 8 protein.
Length = 362
Score = 67.7 bits (158), Expect = 5e-12
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Frame = +2
Query: 2 VHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKG-VVEVTNCFCVPHKEHADQVEA-- 166
VHP+VL +VD + R + RV+G LLG+ K +++ N F VP E
Sbjct: 43 VHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKSTWF 102
Query: 167 -ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLA 343
+++Y +Y + +V + E IVGW+ TG ++ + I+E R C PV V +D
Sbjct: 103 LDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAEPK 162
Query: 344 GGRMGLRAYV 373
+ AY+
Sbjct: 163 NIGLPTEAYI 172
>Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical
protein F36H1.9 protein.
Length = 160
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 120 TASACHTKNMPIKSKRNLITRWMFTS 197
T ACHT M + K+N IT W +++
Sbjct: 55 TLVACHTLQMFLAEKKNTITHWKYST 80
>AL132951-5|CAC44307.1| 426|Caenorhabditis elegans Hypothetical
protein Y67H2A.6 protein.
Length = 426
Score = 28.7 bits (61), Expect = 2.9
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Frame = +2
Query: 2 VHPVVLFQIVDAYERRNADS----HRVIGTLLGTSDKGVVEVTNCFC--VPHKEHADQVE 163
+HP+V+ Q+ + Y R +V G +LG + VE N F + +E A+ V
Sbjct: 16 LHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSFVLKMETEEMAEPVT 75
Query: 164 AELNYAMDVYELNRRVNSSESIVGWWATGNE 256
+ + + V ++G + G +
Sbjct: 76 FSTEHLLQRADQYLEVFPELQVIGLYCAGED 106
>Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical
protein F01D5.1 protein.
Length = 178
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 107 PLLCRSCPIRCR*LCENLHFDVRMRPQFEIKQQD 6
PLL SCP+ C+ LC + P F+ K D
Sbjct: 44 PLLKESCPVTCK-LCPPTEAPTTLAPCFDDKDTD 76
>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
(myotubularin) family protein 5 protein.
Length = 1744
Score = 27.9 bits (59), Expect = 5.0
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +1
Query: 370 CLCTIRSAKWKARLHVHSCRCHSH 441
C CT +W +H CR H H
Sbjct: 1556 CYCTNILTRWSKAVHCKKCRIHVH 1579
>Z70286-2|CAA94290.1| 529|Caenorhabditis elegans Hypothetical
protein K08C7.5 protein.
Length = 529
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 161 RLDRHVLCVARRSSWLLPPLLCRSCP 84
R+ + V V RR +WL+P L R P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230
>U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding
protein LAG-1 protein.
Length = 673
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 84 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 236
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643
>U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein.
Length = 673
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 84 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 236
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643
>AJ582071-1|CAE46541.1| 529|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 529
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 161 RLDRHVLCVARRSSWLLPPLLCRSCP 84
R+ + V V RR +WL+P L R P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230
>AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform b protein.
Length = 671
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 84 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 236
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 591 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 641
>AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform a protein.
Length = 673
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 84 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 236
W AT + + H P+ RN T WMFT+ T + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643
>AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical
protein T04D1.2 protein.
Length = 381
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 15 FYFKLWTHTNVEMQILTELSAPYWARA 95
FY +W+ T V + LT YW R+
Sbjct: 118 FYDMMWSQTTVSYRFLTTPPVTYWIRS 144
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
C23F12.1b protein.
Length = 2747
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +1
Query: 322 YSGHFTGWRSNGFTCICLCTIRSAKWKARLHVHSCRCHSHVL*T*DCRSASVPKDC 489
YS HF ++ +C+C C + + ++HV SH++ D + +P C
Sbjct: 1976 YSNHFQIFQIR--SCLCACFVLFIFFNFKIHVIFTTLSSHLISFIDPKGGPLPVRC 2029
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,694,435
Number of Sequences: 27780
Number of extensions: 303650
Number of successful extensions: 732
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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