Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0409
         (549 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2VEC9 Cluster: SCO-spondin precursor; n=19; Eutheria|R...    35   1.1  
UniRef50_UPI0000660E03 Cluster: Homolog of Homo sapiens "MEGF10 ...    35   1.4  
UniRef50_UPI000150A250 Cluster: conserved hypothetical protein; ...    33   3.3  
UniRef50_UPI0000E49D56 Cluster: PREDICTED: similar to SCO-spondi...    33   4.4  
UniRef50_Q4S8D5 Cluster: Chromosome undetermined SCAF14706, whol...    33   4.4  
UniRef50_A0CPV6 Cluster: Chromosome undetermined scaffold_23, wh...    33   4.4  
UniRef50_Q2LRK1 Cluster: Glucosamine--fructose-6-phosphate amino...    33   5.8  
UniRef50_A0BGU6 Cluster: Chromosome undetermined scaffold_107, w...    32   7.6  
UniRef50_O94776 Cluster: Metastasis-associated protein MTA2; n=2...    32   7.6  

>UniRef50_A2VEC9 Cluster: SCO-spondin precursor; n=19; Eutheria|Rep:
            SCO-spondin precursor - Homo sapiens (Human)
          Length = 5147

 Score = 35.1 bits (77), Expect = 1.1
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = -2

Query: 527  VCVRGEVTNRGCMCGISCEWSSMPS-VSCNR-CGSGV-SRYRSNS 402
            VC +GE+  +   C + C WS+  S   C+R CGSGV +R+RS S
Sbjct: 2699 VCEKGELLCQPGGCPLPCGWSAWSSWAPCDRSCGSGVRARFRSPS 2743


>UniRef50_UPI0000660E03 Cluster: Homolog of Homo sapiens "MEGF10
           protein; n=1; Takifugu rubripes|Rep: Homolog of Homo
           sapiens "MEGF10 protein - Takifugu rubripes
          Length = 192

 Score = 34.7 bits (76), Expect = 1.4
 Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 9/61 (14%)
 Frame = +2

Query: 383 GSFSHQNYCSCSDLRRCRTCCSLRWAC---------WTTRNLCRTCSPCWLLRPLHKLWP 535
           G++     C+C     C   C   W C         WT    C    PC    P H  WP
Sbjct: 131 GTWPCHRTCTCHGTWTCNGTCHGTWPCHRTCTCHGTWTCNGTCHGTWPCHGTWPCHGTWP 190

Query: 536 C 538
           C
Sbjct: 191 C 191



 Score = 32.3 bits (70), Expect = 7.6
 Identities = 14/52 (26%), Positives = 18/52 (34%)
 Frame = +2

Query: 383 GSFSHQNYCSCSDLRRCRTCCSLRWACWTTRNLCRTCSPCWLLRPLHKLWPC 538
           G++     C+C     C   C+     WT    C    PC      H  WPC
Sbjct: 39  GTWPCHRTCTCHGTWPCHRTCTCH-GTWTCNGTCHGTWPCHGTCTCHGTWPC 89



 Score = 32.3 bits (70), Expect = 7.6
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +2

Query: 383 GSFSHQNYCSCSDLRRCRTCCSLRWACWTTRNLCRTCSPCWLLRPLHKLWPC 538
           G++     C+C     C   C   W C  T   C TC   W   P H  WPC
Sbjct: 51  GTWPCHRTCTCHGTWTCNGTCHGTWPCHGT---C-TCHGTW---PCHGTWPC 95


>UniRef50_UPI000150A250 Cluster: conserved hypothetical protein;
           n=1; Tetrahymena thermophila SB210|Rep: conserved
           hypothetical protein - Tetrahymena thermophila SB210
          Length = 624

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 428 RCRTCCSL-RWACWTTRNLCRTC 493
           +C+ CCS+ +W CW T + C  C
Sbjct: 545 KCKFCCSVAQWFCWGTTHFCEPC 567


>UniRef50_UPI0000E49D56 Cluster: PREDICTED: similar to SCO-spondin;
           n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to SCO-spondin - Strongylocentrotus purpuratus
          Length = 1210

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -2

Query: 524 CVRGEVTNRGCMCGISCEWSSMPS-VSCN-RCGSGV-SRYRS 408
           CV G VT     C ++C WSS  S   C+  CG G  +R+RS
Sbjct: 284 CVNGVVTCNEEACPVNCSWSSWSSWTGCSATCGDGTKTRFRS 325



 Score = 32.7 bits (71), Expect = 5.8
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 524 CVRGEVTNRGCMCGISCEWSSMPS-VSCN-RCGSGV-SRYRS 408
           CV G VT     C + C WSS  S   C+  CG G  +R+RS
Sbjct: 532 CVNGAVTCSEEACPVDCSWSSWSSWTGCSATCGDGTKTRFRS 573


>UniRef50_Q4S8D5 Cluster: Chromosome undetermined SCAF14706, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF14706,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 612

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +2

Query: 407 CSCSDLRRCRTCCSLRWACWTTRNLCRTCSPCWLLRPLHKLWPC 538
           CS     R RT    R  C + R  CR  S CW        W C
Sbjct: 477 CSFLSSARTRTSWGARPCCSSARTACRAASSCWSWTTTTPSWTC 520


>UniRef50_A0CPV6 Cluster: Chromosome undetermined scaffold_23, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_23,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 269

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 353 FILLYPDIAWGSFSHQNYCSCSDLRRCRTCCSLRWACWTTRNLCRTCS 496
           +ILL  D+++ + S   +C CS+ +    C   +   W+T  + + CS
Sbjct: 6   YILLIMDLSFAAISTSAFCECSEFQTSIECAQQQNCKWSTSCMDKICS 53


>UniRef50_Q2LRK1 Cluster: Glucosamine--fructose-6-phosphate
           aminotransferase; n=1; Syntrophus aciditrophicus SB|Rep:
           Glucosamine--fructose-6-phosphate aminotransferase -
           Syntrophus aciditrophicus (strain SB)
          Length = 1273

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 455 SVSCNRCGSGVSRYRSNSFGEKRSPMRCLGRVE*NGR 345
           S++CNR G+GVSR     + +    + CL R+E  GR
Sbjct: 195 SLACNRHGNGVSREAFRKYRKLNYLLNCLDRLEVRGR 231


>UniRef50_A0BGU6 Cluster: Chromosome undetermined scaffold_107,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_107,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 545

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 428 RCRTCCSLR-WACWTTRNLCRTC 493
           +CR CC++  + CW T + C+TC
Sbjct: 466 KCRYCCNIATYFCWGTTHFCQTC 488


>UniRef50_O94776 Cluster: Metastasis-associated protein MTA2; n=29;
           Bilateria|Rep: Metastasis-associated protein MTA2 - Homo
           sapiens (Human)
          Length = 668

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 431 CRTCCSLRWACWTTRNL-CRTCSPCWL 508
           C T  S +W  W   N+ CR C+ CW+
Sbjct: 370 CHTTQSAQWYAWGPPNMQCRLCASCWI 396


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 395,486,358
Number of Sequences: 1657284
Number of extensions: 6004126
Number of successful extensions: 17827
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17762
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)