Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0409
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    26   4.2  
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    26   4.2  

>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 332 CARRIFRFILLYPDIAWGSFSHQNYCSCSDLR 427
           C RR FR  +  P I +G+     YC  + L+
Sbjct: 38  CVRRRFRGTISMPKIGYGNNKKTRYCMPNGLK 69


>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 332 CARRIFRFILLYPDIAWGSFSHQNYCSCSDLR 427
           C RR FR  +  P I +G+     YC  + L+
Sbjct: 38  CVRRRFRGTISMPKIGYGNNKKTRYCMPNGLK 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,550,911
Number of Sequences: 5004
Number of extensions: 22609
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)