Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0409
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0322 - 2335577-2335931,2336030-2336991                           29   3.2  
04_01_0442 + 5770019-5771626,5773500-5773571,5774508-5774603,577...    28   4.3  
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    27   7.5  
05_02_0037 + 5883285-5884292                                           27   9.9  
02_02_0577 - 11736474-11736609,11736756-11737003,11738002-117380...    27   9.9  
01_06_0878 - 32669790-32669846,32670206-32670299,32670384-326704...    27   9.9  

>06_01_0322 - 2335577-2335931,2336030-2336991
          Length = 438

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 467 TTRNLCRTCSPCWLLRPLHKLWPCR 541
           T R+L R   PC    P+ + W CR
Sbjct: 79  TRRSLARYTGPCMATNPIDRCWRCR 103


>04_01_0442 +
           5770019-5771626,5773500-5773571,5774508-5774603,
           5774739-5774885,5775429-5775560
          Length = 684

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 279 KSYFAPAVAVLAPIVKGGAPAESSVSFYS 365
           + +FAPA+++ AP++ GG   E S S  S
Sbjct: 78  REHFAPALSIRAPLIIGGRRHEGSSSLPS 106


>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 473 EWSSMPSVSCNRCGSGVSRYRSNSFGEKRSPMRC 372
           E+++  S+ C  CG GV+   +N+ G    P RC
Sbjct: 55  EFAAAASIDCGGCGGGVA-VAANATGGLDCPTRC 87


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 500 RGCMCGISCEWSSMPSVSCNRCGSG 426
           +G  C   C W S PSV   RCG G
Sbjct: 296 QGGWCLFRCCWPSPPSVWWPRCGCG 320


>02_02_0577 -
           11736474-11736609,11736756-11737003,11738002-11738087,
           11738557-11738633,11738813-11738846,11739922-11740037,
           11740121-11740659
          Length = 411

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 470 WSSMPSVSCNRCGSGVSRYRSNSFGEKR---SPMRCLGRVE*NGRFCGR 333
           WSS P   CN      +  RS    +++    P+RC   V  +G FC R
Sbjct: 92  WSSFPEAGCNGRSLAKAPSRSGQLPQQQRVHGPLRC--SVRGSGLFCQR 138


>01_06_0878 -
           32669790-32669846,32670206-32670299,32670384-32670499,
           32670786-32671096,32672243-32672364,32672754-32672870,
           32672982-32673054,32673416-32673542,32673659-32673727,
           32673811-32674170,32674493-32674633
          Length = 528

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 261 RRLNKQLEHMPSKLVRHMLSRLVQSMLSRLVQS 163
           R +N+ LEHM +  +R +LSR  + +  + V S
Sbjct: 316 RIMNEMLEHMDAYYLRRILSRCPEQLKQKQVNS 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,459,794
Number of Sequences: 37544
Number of extensions: 192510
Number of successful extensions: 677
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)