Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0409
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)            29   2.5  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      28   5.8  
SB_29407| Best HMM Match : TP2 (HMM E-Value=0.21)                      28   5.8  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45)                  27   7.6  
SB_7343| Best HMM Match : EGF (HMM E-Value=0)                          27   7.6  

>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
          Length = 647

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 270 ETQRRLNKQLEHMPSKLVRHMLSRLVQSMLSRLVQSMQHTLGR 142
           +TQR L KQ++H   K ++H   +  Q  L +      H  G+
Sbjct: 541 KTQRLLEKQIQHPVEKAIQHAQEKKYQPELEKKTIKSHHVPGQ 583


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 407 CSCSDL-RRCRT-CCSLRWACWTTRNLCRTC 493
           CSC  +   CR  CCS R  C++ R  C +C
Sbjct: 235 CSCRVVCYSCRVACCSCRVVCYSCRVACCSC 265


>SB_29407| Best HMM Match : TP2 (HMM E-Value=0.21)
          Length = 215

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 500 RGCMCGISCEWSSMP 456
           RGC+ G+ C+WS  P
Sbjct: 120 RGCVYGLDCDWSKSP 134


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 291  APAVAVLAPIVKGGAPAESSVSFYST 368
            AP V + AP+V G AP+E  V F +T
Sbjct: 1213 APTVPLHAPVVIGTAPSEKIVMFTNT 1238


>SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45)
          Length = 248

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 380 WGSFSHQNYCSCSDLRRCRTC--CSLRWACWTTRNLCRTCSP 499
           +G    +N   C  L RC+T   C  R+ C    NLC  CSP
Sbjct: 37  FGDCMRRNGSLCG-LGRCQTDSECVARYRCIHRDNLCLRCSP 77


>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1233

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
 Frame = -2

Query: 524 CVRGEVTNRGCMCGISCEWSSMPSVSCNRCGSGVSRYR-------SNSFGEKRSPMRCLG 366
           CV G  T + C   I  + +S P ++   C  GV+ Y        + +  E  +P RC  
Sbjct: 198 CVPG-FTGKNCEINID-DCASRPCLNGGLCVDGVNSYSCLCQPDINGNNCEIVTPNRCQP 255

Query: 365 RVE*NGRFCGRTALNDG 315
               NG  C RT  NDG
Sbjct: 256 NPCENGGTCDRTVGNDG 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,728,751
Number of Sequences: 59808
Number of extensions: 216650
Number of successful extensions: 667
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)