Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0409
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    28   3.9  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    28   3.9  
AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical ...    27   6.7  

>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 413 CSDLRRCRTCCSLRWACWTTRNLCRTCSPC 502
           C   RRC TCC  R  C T    C  C PC
Sbjct: 93  CCCCRRCCTCC--RTCCCT--RCCTCCRPC 118


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 503 NRGCMCGISCEWSSMPSVSCNR 438
           NR C+ G+SCE +S   + CN+
Sbjct: 469 NRECIDGVSCEGASEEKILCNQ 490



 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -2

Query: 470 WSSMPSVSCNRCGSGVSRYRSNSFGEKRSPMRCLGRVE*NGRFCGRTALNDG 315
           + + P +  N C   V +   + +GE    MRC    E   RFC R+ +  G
Sbjct: 797 FQTRPCLEQNACQDPVGKCEWSEWGEWCGCMRCRPGKEVRRRFCDRSPIGRG 848


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 503 NRGCMCGISCEWSSMPSVSCNR 438
           NR C+ G+SCE +S   + CN+
Sbjct: 469 NRECIDGVSCEGASEEKILCNQ 490



 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -2

Query: 470 WSSMPSVSCNRCGSGVSRYRSNSFGEKRSPMRCLGRVE*NGRFCGRTALNDG 315
           + + P +  N C   V +   + +GE    MRC    E   RFC R+ +  G
Sbjct: 797 FQTRPCLEQNACQDPVGKCEWSEWGEWCGCMRCRPGKEVRRRFCDRSPIGRG 848


>AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical
           protein Y55F3C.9 protein.
          Length = 711

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +2

Query: 257 LRCVSRLQELLRACRRRLSTHR*GRCARRIFRFILLYPDIAWGSFSHQNYCSC 415
           LRC++R+  LLR    R   +    C  +I   I  +P  +  +  +  Y  C
Sbjct: 505 LRCLTRILFLLRQAHERNEEYDLIGCMMKIIEVIETFPSTSANNLRYSIYMEC 557


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,021,654
Number of Sequences: 27780
Number of extensions: 150309
Number of successful extensions: 463
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)