Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0409
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 406 IVLVRKGAPCDVWVE*NETEDS 341
           +V + +G P + WV  NE +DS
Sbjct: 299 LVPMLQGFPSNSWVAINELQDS 320


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 406 IVLVRKGAPCDVWVE*NETEDS 341
           +V + +G P + WV  NE +DS
Sbjct: 267 LVPMLQGFPSNSWVAINELQDS 288


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 443 CSLRWACWT 469
           C L+WA WT
Sbjct: 145 CVLKWASWT 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,623
Number of Sequences: 438
Number of extensions: 1634
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)