Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0409
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43270.3 68418.m05289 squamosa promoter-binding protein-like ...    30   0.89 
At5g43270.2 68418.m05288 squamosa promoter-binding protein-like ...    30   0.89 
At5g43270.1 68418.m05287 squamosa promoter-binding protein-like ...    30   0.89 
At3g42110.1 68416.m04323 hypothetical protein                          28   3.6  
At5g18400.2 68418.m02165 expressed protein contains Pfam profile...    27   6.2  
At5g18400.1 68418.m02164 expressed protein contains Pfam profile...    27   6.2  
At5g46070.1 68418.m05665 guanylate-binding family protein contai...    27   8.3  
At3g06330.1 68416.m00729 zinc finger (C3HC4-type RING finger) fa...    27   8.3  
At3g05000.1 68416.m00543 transport protein particle (TRAPP) comp...    27   8.3  
At2g36630.1 68415.m04492 expressed protein  contains Pfam profil...    27   8.3  

>At5g43270.3 68418.m05289 squamosa promoter-binding protein-like 2
           (SPL2) identical to squamosa promoter binding
           protein-like 2 [Arabidopsis thaliana] GI:5931645;
           contains Pfam profile PF03110: SBP domain
          Length = 419

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 236 CSSCLFNLRCVSRLQELLRACRRRLSTH 319
           C  C     C+S   E  R+CRRRLS H
Sbjct: 210 CQQCS-RFHCLSEFDEKKRSCRRRLSDH 236


>At5g43270.2 68418.m05288 squamosa promoter-binding protein-like 2
           (SPL2) identical to squamosa promoter binding
           protein-like 2 [Arabidopsis thaliana] GI:5931645;
           contains Pfam profile PF03110: SBP domain
          Length = 419

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 236 CSSCLFNLRCVSRLQELLRACRRRLSTH 319
           C  C     C+S   E  R+CRRRLS H
Sbjct: 210 CQQCS-RFHCLSEFDEKKRSCRRRLSDH 236


>At5g43270.1 68418.m05287 squamosa promoter-binding protein-like 2
           (SPL2) identical to squamosa promoter binding
           protein-like 2 [Arabidopsis thaliana] GI:5931645;
           contains Pfam profile PF03110: SBP domain
          Length = 419

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 236 CSSCLFNLRCVSRLQELLRACRRRLSTH 319
           C  C     C+S   E  R+CRRRLS H
Sbjct: 210 CQQCS-RFHCLSEFDEKKRSCRRRLSDH 236


>At3g42110.1 68416.m04323 hypothetical protein
          Length = 448

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 380 WGSFSHQNYCSCSDLRRCRTCCSLRWACWTTRNLCRTCSPCWLLRPLH 523
           WG+F+ Q + +C D  R    C LR+    +    RT S  + +  +H
Sbjct: 102 WGTFAEQIFRACQDSNRGMVICILRFVKIKSYKGVRTLSNSFDVTQVH 149


>At5g18400.2 68418.m02165 expressed protein contains Pfam profile
           PF05093: Protein of unknown function (DUF689)
          Length = 272

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 527 VCVRGEVTNRGCMCGISCEWSSMPSVSCNRCGSG 426
           VC R E+  +    G++ +    P  SC  CG G
Sbjct: 206 VCGRAEIEEKAVKLGLTEDQIENPQSSCGSCGLG 239


>At5g18400.1 68418.m02164 expressed protein contains Pfam profile
           PF05093: Protein of unknown function (DUF689)
          Length = 269

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 527 VCVRGEVTNRGCMCGISCEWSSMPSVSCNRCGSG 426
           VC R E+  +    G++ +    P  SC  CG G
Sbjct: 203 VCGRAEIEEKAVKLGLTEDQIENPQSSCGSCGLG 236


>At5g46070.1 68418.m05665 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 1060

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 512 EVTNRGCMCGISCEWSSMPSVSCNRC-GSGVSRYRSNSFGEKRSP 381
           +  N G +  I+  W S+    C R   SGV  Y + +F + ++P
Sbjct: 310 DALNNGAVPTITSSWQSVEETECRRAYDSGVEAYMA-AFDQSKAP 353


>At3g06330.1 68416.m00729 zinc finger (C3HC4-type RING finger)
           family protein contains InterPro Entry IPR001841
           Zn-finger, RING ; contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 426

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 407 CSCS-DLRRCRTCCSLRWACWTTRNLCRTCSPC 502
           CSC  DLR     C+++W  ++T+   RTC  C
Sbjct: 235 CSCKGDLRLVHEACAMKW--FSTKG-TRTCDVC 264


>At3g05000.1 68416.m00543 transport protein particle (TRAPP)
           component Bet3 family protein similar to Transport
           protein particle 33 kDa subunit (TRAPP 33 kDa subunit)
           (Swiss-Prot:Q99394) [Saccharomyces cerevisiae]; contains
           Pfam profile PF04051: Transport protein particle (TRAPP)
           component, Bet3
          Length = 173

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 521 VRGEVTNRGCMCGISCEWSSMPSVS 447
           +RG ++N G  C +S + SS+P+ S
Sbjct: 142 IRGVLSNLGIPCAVSADISSLPTCS 166


>At2g36630.1 68415.m04492 expressed protein  contains Pfam profile:
           PF01925 domain of unknown function DUF81
          Length = 459

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 503 NRGCMCGISCEWSSMPSVSCNRCG 432
           N  C+C  + EW+ +  + C  CG
Sbjct: 301 NTECICEATIEWTPLSLIFCGLCG 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,579,808
Number of Sequences: 28952
Number of extensions: 135542
Number of successful extensions: 476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)