Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0408
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.7  
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual     26   5.7  

>SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 100

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 125 FTHRGKGSDFQYLVMGDEMDPCECLWNHELAMRRLISLL 241
           FT+  + S F++L     +DP E  W   + +    SLL
Sbjct: 15  FTNAKRYSSFRFLFPSKNLDPNETKWGWNIRIATFRSLL 53


>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 590 LTLIHVESVLYHNSVFIIQITGIQ 519
           L+L H+ S + H S+F+I+  G+Q
Sbjct: 59  LSLFHIISGVNHESLFVIRDLGVQ 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,781
Number of Sequences: 5004
Number of extensions: 53114
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)