Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0408
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352...    31   1.1  
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522...    30   1.5  
04_03_0047 + 10118929-10119276                                         29   2.6  
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138...    29   4.5  
04_04_1560 - 34432491-34432837,34433097-34433292                       29   4.5  
11_01_0076 - 600256-600897                                             28   7.8  

>11_01_0456 +
           3522599-3523921,3524005-3524027,3524097-3525265,
           3525373-3525737
          Length = 959

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +1

Query: 58  ILVNVGTVVSLQNIISNQLLFLFHSQRQRK*LSVPSYG 171
           IL+ V  +VSL  +IS  + F +  +R+R+ LS+PS+G
Sbjct: 596 ILIPVACLVSLAMVIS--IFFTWRGKRKRESLSLPSFG 631


>04_04_1624 - 34849385-34849410,34849748-34851052,34852121-34852294,
            34852386-34852456,34852563-34852618,34853047-34853185,
            34853310-34853695,34853801-34853851,34853936-34854021,
            34854112-34854553,34856241-34856315,34856457-34856593,
            34856679-34856838,34856917-34857012,34857093-34857247,
            34857900-34858032
          Length = 1163

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 320  CQPTPAAEALVIARGIRFPCNTIGLD-GAVRLSGA 219
            C P PAA+ + +   I F C   G+D GA+R  G+
Sbjct: 1079 CVPKPAADEVALQVNIDFVCGQGGIDCGAIRAGGS 1113


>04_03_0047 + 10118929-10119276
          Length = 115

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 423 ILTTVTVLPLHLQEFNQHLPRRLVHPEWSLPPLNSSYL 536
           I T+V V  + L   +Q LP   +HP + +PPL +S L
Sbjct: 63  ITTSVVVAAIFLSSCHQPLPSA-IHPSYRMPPLPTSPL 99


>11_03_0158 +
           10911997-10912078,10912203-10912288,10913780-10913857,
           10913967-10914098,10914385-10914435,10914529-10914669,
           10914754-10914876,10914989-10915066,10915448-10915541,
           10915633-10915739,10915936-10916019,10916649-10916744,
           10916835-10917023,10917705-10917780,10918507-10918610,
           10918708-10918967,10920000-10920086,10920184-10920411,
           10920752-10920826,10921264-10921346,10921552-10921661
          Length = 787

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 450 LHLQEFNQHLPRRLVHPEWSLPPLNSSYLYYKHRVVIQH 566
           LHL+     +  +LVHP   LP + S  L ++ ++ + H
Sbjct: 554 LHLKNVPTEIASKLVHPSRRLPVVVSGLLQHESKISVLH 592


>04_04_1560 - 34432491-34432837,34433097-34433292
          Length = 180

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +2

Query: 401 DAAKPAHNPHDRDGAPPTPPRI*STLAEATCSSRVVVATFEFQLFV 538
           DA  PA  P     APPTPP   S  A A  +  + VA     +FV
Sbjct: 133 DAPPPASPPPPPSNAPPTPPHP-SGAASALGAGGLAVAAMLLPVFV 177


>11_01_0076 - 600256-600897
          Length = 213

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = +1

Query: 181 GSVRVPLES*AGHAPLNLTAPSRPIVLHGKRMPRAITRASAAGVGWQQLHHDVRDDGICV 360
           GS+R+      GH  LN+ +PS    +  + +P +  + S AGVG       VR+D   V
Sbjct: 14  GSIRLTSPRITGHRHLNVRSPSAAAAVLFRNIP-SPPQHSLAGVG-VSASAPVRNDAHVV 71

Query: 361 SYVHDAPATQPD 396
           S   D   +  D
Sbjct: 72  SPASDVTQSGAD 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,192,408
Number of Sequences: 37544
Number of extensions: 392806
Number of successful extensions: 1188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)