Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0408
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46996-4|CAA87095.2|  101|Caenorhabditis elegans Hypothetical pr...    48   6e-06
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    27   2.8  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily ass...    27   9.2  
U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily ass...    27   9.2  
U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily ass...    27   9.2  

>Z46996-4|CAA87095.2|  101|Caenorhabditis elegans Hypothetical
           protein C34C12.4 protein.
          Length = 101

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 17/32 (53%), Positives = 26/32 (81%)
 Frame = +2

Query: 182 DPCECLWNHELAMRRLISLLRQGQSYCTESEC 277
           DPCEC ++HE AM+RL+++LR  Q+ CT++ C
Sbjct: 3   DPCECFFDHESAMQRLLAMLRNSQADCTDTGC 34


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 27.1 bits (57), Expect(2) = 2.8
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 437 DGAPPTPPRI*STLAEATCSSR 502
           D APP PPRI S  + A  SSR
Sbjct: 267 DDAPPPPPRIASKTSVAPTSSR 288



 Score = 20.6 bits (41), Expect(2) = 2.8
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 380 PRRNQIQDAAKPAHNPHDRDGAPPTP 457
           P+       A+P   P  R  APP P
Sbjct: 219 PQATSATRLARPLAPPPARPAAPPPP 244


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 27.1 bits (57), Expect(2) = 2.8
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 437 DGAPPTPPRI*STLAEATCSSR 502
           D APP PPRI S  + A  SSR
Sbjct: 265 DDAPPPPPRIASKTSVAPTSSR 286



 Score = 20.6 bits (41), Expect(2) = 2.8
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 380 PRRNQIQDAAKPAHNPHDRDGAPPTP 457
           P+       A+P   P  R  APP P
Sbjct: 217 PQATSATRLARPLAPPPARPAAPPPP 242


>Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical
           protein R08D7.1 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 377 RPRRNQIQDAAKPAHNPHDRDGAPPTPPR 463
           R R +  +D + P    HD D +PP P R
Sbjct: 137 RNRHDSDKDNSPPRRRRHDSDNSPPRPSR 165


>U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform c protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 389 NQIQDAAKPAHNPHDRDGAPPTPPRI*STLAEATCSSRVVVAT 517
           N+++++ KP+H   D      +PP   S  A  TC+  + + T
Sbjct: 251 NRVENSLKPSHERFDSTDCEDSPPNGDSLEAGTTCNISMSLVT 293


>U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform b protein.
          Length = 592

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 389 NQIQDAAKPAHNPHDRDGAPPTPPRI*STLAEATCSSRVVVAT 517
           N+++++ KP+H   D      +PP   S  A  TC+  + + T
Sbjct: 358 NRVENSLKPSHERFDSTDCEDSPPNGDSLEAGTTCNISMSLVT 400


>U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform a protein.
          Length = 564

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 389 NQIQDAAKPAHNPHDRDGAPPTPPRI*STLAEATCSSRVVVAT 517
           N+++++ KP+H   D      +PP   S  A  TC+  + + T
Sbjct: 330 NRVENSLKPSHERFDSTDCEDSPPNGDSLEAGTTCNISMSLVT 372


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,061,648
Number of Sequences: 27780
Number of extensions: 310022
Number of successful extensions: 782
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)