Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0408
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.1  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 285 CSRHSLSVQYDWP*RSSEIKRRMASS*FQRHSHGSISSP 169
           C R SLS +     RS    +R +SS   R S  S  SP
Sbjct: 6   CDRKSLSQRKIIRSRSRRYSKRFSSSIVDRRSPSSSRSP 44


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/37 (21%), Positives = 17/37 (45%)
 Frame = -1

Query: 651 LCYIPNHLMKIIYM*IGHSRAYVNTRRVCVVSQLCVY 541
           +C+ P H  +++Y+    S  Y +      +   C+Y
Sbjct: 281 ICWAPFHTQRLLYVYAQESDYYPDLNEWLYILSGCLY 317


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 160 VLKVTSFASVSEIRTIIDY*LYFGEKLQYLRLLK*FEMKIFSKLSTIA 17
           VLK  S  + S  R ++D    F E++  LRL    E+ +F  +  IA
Sbjct: 301 VLKRESIHNSSNARFLMDSMFDFAERVNSLRLSD-AELGLFCSVVVIA 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,435
Number of Sequences: 438
Number of extensions: 4135
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)