Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0408
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24620.1 68418.m02908 thaumatin-like protein, putative simila...    28   6.5  
At5g14250.1 68418.m01665 COP9 signalosome complex subunit 3 / CS...    27   8.6  
At4g20270.1 68417.m02961 leucine-rich repeat transmembrane prote...    27   8.6  

>At5g24620.1 68418.m02908 thaumatin-like protein, putative similar
           to thaumatin-like protein [Arabidopsis thaliana]
           GI:2435406; contains Pfam profile PF00314: Thaumatin
           family
          Length = 420

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 380 PRRNQI-QDAAKPAHNPHDRDGAPPTPP 460
           P +NQ  Q  A P  N + +  APPTPP
Sbjct: 315 PTQNQYDQPLAPPTQNQYGQPMAPPTPP 342


>At5g14250.1 68418.m01665 COP9 signalosome complex subunit 3 / CSN
           complex subunit 3 (CSN3) / FUSCA protein (FUS11) CSN3,
           FUS11; identical to COP9 signalosome subunit 3
           GI:14388969 [Arabidopsis thaliana]; identical to cDNA
           CSN complex subunit 3 (CSN3)  GI:18056656; contains Pfam
           profile PF01399: PCI domain
          Length = 429

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 352 ICVSYVHDAPATQPDPRCGQTSAQSSRP*RCSPY 453
           I VS +H+   T   P+C  T+AQ S      PY
Sbjct: 227 ILVSLIHNGQFTNTLPKCASTAAQRSFKNYTGPY 260


>At4g20270.1 68417.m02961 leucine-rich repeat transmembrane protein
           kinase, putative CLAVATA1 receptor kinase, Arabidopsis
           th., PATX:G2160756
          Length = 992

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +2

Query: 146 SDFQYLVMGDEMDPCECLWNHELAMRRLISLLRQGQSYCTESECLEQ----LPGLPQPES 313
           ++F +  + +++  CE LW   L    L S L +G  Y      LE     L G    E 
Sbjct: 400 NNFLFGPLPEDLGQCEPLWRFRLGQNFLTSKLPKGLIYLPNLSLLELQNNFLTGEIPEEE 459

Query: 314 AGNS 325
           AGN+
Sbjct: 460 AGNA 463


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,174,263
Number of Sequences: 28952
Number of extensions: 287880
Number of successful extensions: 672
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)