Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0406
(713 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2 p... 23 2.5
AY695258-1|AAW21975.1| 232|Tribolium castaneum muscle segment h... 23 2.5
AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein pr... 23 2.5
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 23 3.3
AY600513-1|AAT11861.1| 314|Tribolium castaneum spalt-like prote... 22 4.3
AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain tran... 21 7.5
AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain tran... 21 7.5
AF230313-1|AAF64147.1| 210|Tribolium castaneum labial protein p... 21 7.5
AF230312-1|AAF64146.1| 253|Tribolium castaneum labial protein p... 21 7.5
AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless pr... 21 7.5
AY695256-1|AAW21973.1| 168|Tribolium castaneum ventral nerve co... 21 9.9
AJ005083-1|CAB65469.1| 585|Tribolium castaneum signal receptor ... 21 9.9
>EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2
protein.
Length = 535
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -2
Query: 271 GSPLCSPRRCPANAFPLYRWIRQRRGYP 188
G+P+C NA L +W + G+P
Sbjct: 324 GNPICVQIPWDKNAEALAKWANGQTGFP 351
>AY695258-1|AAW21975.1| 232|Tribolium castaneum muscle segment
homeodomain protein protein.
Length = 232
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 270 PSSLSPTPIQL*RCALREH 326
P + +PT + RCALR+H
Sbjct: 94 PQTSAPTGPPIVRCALRKH 112
>AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein
protein.
Length = 203
Score = 23.0 bits (47), Expect = 2.5
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +1
Query: 490 DDLAQRCAQYKKDGCH 537
D++A RCA +++ CH
Sbjct: 161 DEIAIRCAFLERENCH 176
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
Length = 2700
Score = 22.6 bits (46), Expect = 3.3
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +3
Query: 492 RPRPALRPVQEGRLPLRQVALRAEDRPQHPLVPS--YPGKRQCSRPLRFHLSE 644
RP P Q +P V + D+P P P P C+ R L E
Sbjct: 1073 RPTTTNWPTQGTTIPPPAVVMPEVDKPSQPCEPGQYVPDPHNCNAYYRCVLGE 1125
>AY600513-1|AAT11861.1| 314|Tribolium castaneum spalt-like protein
protein.
Length = 314
Score = 22.2 bits (45), Expect = 4.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 258 HRGEPSSLSPTPIQ 299
H GEP+ L+P IQ
Sbjct: 217 HTGEPTDLTPEQIQ 230
>AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain
transcription factor Labialprotein.
Length = 353
Score = 21.4 bits (43), Expect = 7.5
Identities = 6/18 (33%), Positives = 10/18 (55%)
Frame = -2
Query: 241 PANAFPLYRWIRQRRGYP 188
P P Y+W++ +R P
Sbjct: 190 PQPVLPTYKWMQVKRNVP 207
>AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain
transcription factor Prothoraxlessprotein.
Length = 323
Score = 21.4 bits (43), Expect = 7.5
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +3
Query: 411 HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPAL-RPVQEGRLPLRQVALRAEDRPQHPLV 587
HH H +Q + G MH G +P + + +G+ P A A P +P +
Sbjct: 178 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQGQQPPGNTA-AALPSPLYPWM 236
Query: 588 PS 593
S
Sbjct: 237 RS 238
>AF230313-1|AAF64147.1| 210|Tribolium castaneum labial protein
protein.
Length = 210
Score = 21.4 bits (43), Expect = 7.5
Identities = 6/18 (33%), Positives = 10/18 (55%)
Frame = -2
Query: 241 PANAFPLYRWIRQRRGYP 188
P P Y+W++ +R P
Sbjct: 190 PQPVLPTYKWMQVKRNVP 207
>AF230312-1|AAF64146.1| 253|Tribolium castaneum labial protein
protein.
Length = 253
Score = 21.4 bits (43), Expect = 7.5
Identities = 6/18 (33%), Positives = 10/18 (55%)
Frame = -2
Query: 241 PANAFPLYRWIRQRRGYP 188
P P Y+W++ +R P
Sbjct: 190 PQPVLPTYKWMQVKRNVP 207
>AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless
protein.
Length = 325
Score = 21.4 bits (43), Expect = 7.5
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +3
Query: 411 HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPAL-RPVQEGRLPLRQVALRAEDRPQHPLV 587
HH H +Q + G MH G +P + + +G+ P A A P +P +
Sbjct: 180 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQGQQPPGNTA-AALPSPLYPWM 238
Query: 588 PS 593
S
Sbjct: 239 RS 240
>AY695256-1|AAW21973.1| 168|Tribolium castaneum ventral nerve cord
defective protein protein.
Length = 168
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 292 GVGDNDDGSPLCSPRR 245
G+ D + +PL SPRR
Sbjct: 103 GMHDQQNNNPLPSPRR 118
>AJ005083-1|CAB65469.1| 585|Tribolium castaneum signal receptor
protein protein.
Length = 585
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/25 (32%), Positives = 10/25 (40%)
Frame = +3
Query: 3 SCRIRHEGITCVVADPKSASLSCCN 77
+C + GI C D SC N
Sbjct: 10 TCPLGFSGINCQTNDEDCTETSCMN 34
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,037
Number of Sequences: 336
Number of extensions: 4145
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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