Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0406
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical pr... 282 2e-76
D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1 pr... 277 6e-75
U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical p... 244 5e-65
U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical p... 244 5e-65
D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2 pr... 244 5e-65
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 29 4.4
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 29 4.4
AF016439-1|AAB65898.3| 721|Caenorhabditis elegans Hypothetical ... 29 4.4
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu... 28 5.8
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 28 5.8
AL132952-11|CAB61148.1| 136|Caenorhabditis elegans Hypothetical... 28 5.8
AC024775-8|AAK68458.1| 347|Caenorhabditis elegans Hypothetical ... 28 5.8
Z82053-1|CAB04834.1| 233|Caenorhabditis elegans Hypothetical pr... 28 7.6
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 7.6
>Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical
protein T05D4.1 protein.
Length = 365
Score = 282 bits (692), Expect = 2e-76
Identities = 135/201 (67%), Positives = 160/201 (79%)
Frame = +1
Query: 106 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYR 285
M++Y Q+ T ++EL+ IA AIV P KGILAADESTG+M KRL IG+ENTEENRR+YR
Sbjct: 1 MASYSQFLTKAQEDELRSIANAIVTPGKGILAADESTGSMDKRLNSIGLENTEENRRKYR 60
Query: 286 QLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE 465
QLLF++ A L++ ISGVI+FHET YQK DDG P +LL+++GIIPGIKVDKGVVP+ G+
Sbjct: 61 QLLFTAGADLNKYISGVIMFHETFYQKTDDGKPFTALLQEQGIIPGIKVDKGVVPMAGTI 120
Query: 466 DECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQS 645
E TTQGLDDL RCAQYKKDG FAKWRCV KI TPS A++E A+ LARYASICQ
Sbjct: 121 GEGTTQGLDDLNARCAQYKKDGAQFAKWRCVHKISSTTPSVTALKEIASNLARYASICQQ 180
Query: 646 QRIVPIVEPEVLPDGEHDLDR 708
+VPIVEPE+LPDGEH L R
Sbjct: 181 NGLVPIVEPEILPDGEHCLAR 201
>D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1
protein.
Length = 366
Score = 277 bits (679), Expect = 6e-75
Identities = 134/202 (66%), Positives = 160/202 (79%), Gaps = 1/202 (0%)
Frame = +1
Query: 106 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYR 285
M++Y Q+ T ++EL+ IA AIV P KGILAADESTG+M KRL IG+ENTEENRR+YR
Sbjct: 1 MASYSQFLTKAQEDELRSIANAIVTPGKGILAADESTGSMDKRLNSIGLENTEENRRKYR 60
Query: 286 QLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE 465
QLLF++ A L++ ISGVI+FHET YQK DDG P +LL+++GIIPGIKVDKGVVP+ G+
Sbjct: 61 QLLFTAGADLNKYISGVIMFHETFYQKTDDGKPFTALLQEQGIIPGIKVDKGVVPMAGTI 120
Query: 466 DECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENA-NVLARYASICQ 642
E TTQGLDDL RCAQYKKDG FAKWRCV KI TPS A++E A N+ +RYASICQ
Sbjct: 121 GEGTTQGLDDLNARCAQYKKDGAQFAKWRCVHKISSTTPSVTALKEIASNLGSRYASICQ 180
Query: 643 SQRIVPIVEPEVLPDGEHDLDR 708
+VPIVEPE+LPDGEH L R
Sbjct: 181 QNGLVPIVEPEILPDGEHCLAR 202
>U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical
protein F01F1.12a protein.
Length = 366
Score = 244 bits (597), Expect = 5e-65
Identities = 122/194 (62%), Positives = 147/194 (75%)
Frame = +1
Query: 130 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 309
T ++EL +IA IV KGILAADESTGT+GKRL I +EN E NR++YRQLLF++
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTTPN 72
Query: 310 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGL 489
L+++ISGVIL+ ET +Q D G LL K+GI+PGIK+D GVVPL G+ E TTQGL
Sbjct: 73 -LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDLGVVPLAGTIGEGTTQGL 131
Query: 490 DDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVPIVE 669
D LA+R A +KK GC FAKWRCVL IG +TPS+ + ENANVLARYASICQ+ +VPIVE
Sbjct: 132 DKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLENANVLARYASICQANGLVPIVE 191
Query: 670 PEVLPDGEHDLDRA 711
PEVL DGEHDL RA
Sbjct: 192 PEVLCDGEHDLARA 205
>U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical
protein F01F1.12b protein.
Length = 259
Score = 244 bits (597), Expect = 5e-65
Identities = 122/194 (62%), Positives = 147/194 (75%)
Frame = +1
Query: 130 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 309
T ++EL +IA IV KGILAADESTGT+GKRL I +EN E NR++YRQLLF++
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTTPN 72
Query: 310 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGL 489
L+++ISGVIL+ ET +Q D G LL K+GI+PGIK+D GVVPL G+ E TTQGL
Sbjct: 73 -LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDLGVVPLAGTIGEGTTQGL 131
Query: 490 DDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVPIVE 669
D LA+R A +KK GC FAKWRCVL IG +TPS+ + ENANVLARYASICQ+ +VPIVE
Sbjct: 132 DKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLENANVLARYASICQANGLVPIVE 191
Query: 670 PEVLPDGEHDLDRA 711
PEVL DGEHDL RA
Sbjct: 192 PEVLCDGEHDLARA 205
>D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2
protein.
Length = 366
Score = 244 bits (597), Expect = 5e-65
Identities = 122/194 (62%), Positives = 147/194 (75%)
Frame = +1
Query: 130 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 309
T ++EL +IA IV KGILAADESTGT+GKRL I +EN E NR++YRQLLF++
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTTPN 72
Query: 310 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGL 489
L+++ISGVIL+ ET +Q D G LL K+GI+PGIK+D GVVPL G+ E TTQGL
Sbjct: 73 -LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDLGVVPLAGTIGEGTTQGL 131
Query: 490 DDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVPIVE 669
D LA+R A +KK GC FAKWRCVL IG +TPS+ + ENANVLARYASICQ+ +VPIVE
Sbjct: 132 DKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLENANVLARYASICQANGLVPIVE 191
Query: 670 PEVLPDGEHDLDRA 711
PEVL DGEHDL RA
Sbjct: 192 PEVLCDGEHDLARA 205
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Frame = +1
Query: 136 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQ-------DIGV-----ENTEENRRR 279
E++E+ +K++ + + ++ T+ +L+ D+GV E TEEN +R
Sbjct: 747 EVREKNRKLSTEMAEEKSNLSKNEKQLETVNAKLKLAEDLQTDVGVIQQLYEQTEENEKR 806
Query: 280 YRQLLFSSDA 309
Y QL+ SD+
Sbjct: 807 YEQLVSESDS 816
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Frame = +1
Query: 136 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQ-------DIGV-----ENTEENRRR 279
E++E+ +K++ + + ++ T+ +L+ D+GV E TEEN +R
Sbjct: 733 EVREKNRKLSTEMAEEKSNLSKNEKQLETVNAKLKLAEDLQTDVGVIQQLYEQTEENEKR 792
Query: 280 YRQLLFSSDA 309
Y QL+ SD+
Sbjct: 793 YEQLVSESDS 802
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Frame = +1
Query: 136 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQ-------DIGV-----ENTEENRRR 279
E++E+ +K++ + + ++ T+ +L+ D+GV E TEEN +R
Sbjct: 733 EVREKNRKLSTEMAEEKSNLSKNEKQLETVNAKLKLAEDLQTDVGVIQQLYEQTEENEKR 792
Query: 280 YRQLLFSSDA 309
Y QL+ SD+
Sbjct: 793 YEQLVSESDS 802
>AF016439-1|AAB65898.3| 721|Caenorhabditis elegans Hypothetical
protein R02F11.2 protein.
Length = 721
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -2
Query: 571 GRSSARNATWRSGSRPSCTGRSAGR---GRPDPGWCIRL 464
GR N G RPS +G AG RP GWC+++
Sbjct: 253 GRPRPGNGGGGGGVRPSNSGCDAGWRRFNRPSGGWCVKV 291
>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform a
protein.
Length = 1081
Score = 28.3 bits (60), Expect = 5.8
Identities = 34/151 (22%), Positives = 56/151 (37%)
Frame = +3
Query: 249 RGEHRGEPSSLSPTPIQL*RCALREHLWCDPVPRDPLPEG*RWNASGLPAGEEGHHPRHQ 428
+G R + ++ PT Q+ + + + VPR P P P+ G HP Q
Sbjct: 140 QGASREQGNAHQPTAGQIPQSSNQPAQQTHNVPRMPQP----LQQVPHPSPVRGSHPAAQ 195
Query: 429 GRQGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVALRAEDRPQHPLVPSYPGKR 608
Q RI + + P P ++ V+ + Q+ +A R + P R
Sbjct: 196 QVQNAPQ--RIPQHVPMPQGVAPHQVIQQVRAPNIGASQMVQQAPSRGH---TGAAPASR 250
Query: 609 QCSRPLRFHLSEPTHRADCRARSLT*WRARP 701
+P+ H H+A + T R RP
Sbjct: 251 MAQQPVPLHQGVAPHQAAPQTIQQTPARGRP 281
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 28.3 bits (60), Expect = 5.8
Identities = 34/151 (22%), Positives = 56/151 (37%)
Frame = +3
Query: 249 RGEHRGEPSSLSPTPIQL*RCALREHLWCDPVPRDPLPEG*RWNASGLPAGEEGHHPRHQ 428
+G R + ++ PT Q+ + + + VPR P P P+ G HP Q
Sbjct: 140 QGASREQGNAHQPTAGQIPQSSNQPAQQTHNVPRMPQP----LQQVPHPSPVRGSHPAAQ 195
Query: 429 GRQGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVALRAEDRPQHPLVPSYPGKR 608
Q RI + + P P ++ V+ + Q+ +A R + P R
Sbjct: 196 QVQNAPQ--RIPQHVPMPQGVAPHQVIQQVRAPNIGASQMVQQAPSRGH---TGAAPASR 250
Query: 609 QCSRPLRFHLSEPTHRADCRARSLT*WRARP 701
+P+ H H+A + T R RP
Sbjct: 251 MAQQPVPLHQGVAPHQAAPQTIQQTPARGRP 281
>AL132952-11|CAB61148.1| 136|Caenorhabditis elegans Hypothetical
protein Y51H4A.16 protein.
Length = 136
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +1
Query: 424 IKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQE 603
++V + V L + E T + L LAQ+ ++ +D W+C+ G +T + ++I+E
Sbjct: 22 VRVVERAVALHKNSKEKTNEKL--LAQKSGKWARDAESRNTWKCIRAPGAHTHTGESIKE 79
Query: 604 N 606
+
Sbjct: 80 S 80
>AC024775-8|AAK68458.1| 347|Caenorhabditis elegans Hypothetical
protein Y41D4A.8 protein.
Length = 347
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 373 DGTPLVSLLEKKGII--PGIKVDKGVVPLFGSEDECT 477
D +PLVS+L G+I P + + VPLF ED CT
Sbjct: 10 DPSPLVSVL---GLIKSPDLMIGSTEVPLFEEEDMCT 43
>Z82053-1|CAB04834.1| 233|Caenorhabditis elegans Hypothetical
protein T26E3.1 protein.
Length = 233
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -2
Query: 553 NATWRSGSRPSCTGRSAGR---GRPDPGWCIRL 464
N G RP+ G AG RP+ GWC+R+
Sbjct: 48 NGNGNGGGRPTNGGCDAGWRRFNRPNGGWCVRV 80
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -1
Query: 527 SFLYWAQRWARSSRPWVVHSSSDPNSGTTPLSTLMPGMMPFFSSRETRGVPSSA 366
S L +Q +S P VV SSS +S T ST+ P +S + PS++
Sbjct: 450 STLTLSQSPTPTSTPLVVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTS 503
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,263,041
Number of Sequences: 27780
Number of extensions: 400459
Number of successful extensions: 1334
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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