Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0406
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -2

Query: 283 DNDDGSPLCSPRRCPANAFPLYRWIRQRRGYP 188
           D   G+P+C       N   L +W   + G+P
Sbjct: 324 DRMQGNPICVQIPWDKNVEALAKWANGQTGFP 355


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +3

Query: 387  GLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRP 515
            G   G+ G    H G +G      +G   + P SG P P   P
Sbjct: 1821 GSQYGQYGAPYDHYGSRGSVGRRSVGSARNIPVSGSPEPPPPP 1863


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 351 DPLPEG*RWNASGLPAGEEG 410
           DP P   +  AS + AGEEG
Sbjct: 589 DPXPNTCKVIASSVSAGEEG 608


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,537
Number of Sequences: 438
Number of extensions: 4864
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)