Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0405
         (720 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8RHW0 Cluster: Putative uncharacterized protein FN1882...    34   3.1  
UniRef50_Q4XTA9 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_Q6L0T9 Cluster: Hypothetical membrane protein; n=1; Pic...    33   9.4  

>UniRef50_Q8RHW0 Cluster: Putative uncharacterized protein FN1882;
           n=3; Fusobacterium nucleatum subsp. nucleatum|Rep:
           Putative uncharacterized protein FN1882 - Fusobacterium
           nucleatum subsp. nucleatum
          Length = 64

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 118 YFIYYYIYNRKHLLTTCVHFPTFCIYY 38
           YFIYY++YN   L T  +H  +FC ++
Sbjct: 30  YFIYYFLYNLFILWTFYIHLKSFCYFF 56


>UniRef50_Q4XTA9 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 56

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 118 YFIYYYIYNRKHLLTTCVHFPTFCIYYSL 32
           +F+ ++ YN   L+  C+H PT C YYSL
Sbjct: 23  FFLSFFRYN--FLIVMCIHRPTACTYYSL 49


>UniRef50_Q6L0T9 Cluster: Hypothetical membrane protein; n=1;
           Picrophilus torridus|Rep: Hypothetical membrane protein
           - Picrophilus torridus
          Length = 202

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -3

Query: 118 YFIYYYIYNRKHLLTTCVHFPTFCIYYSLFFY*YLREIF 2
           +FIYYYI+N   +L+  + FP   ++ +LF + + +  F
Sbjct: 107 FFIYYYIFN---ILSNIIVFPLIILFLALFLFIFRKSTF 142


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,110,811
Number of Sequences: 1657284
Number of extensions: 9480700
Number of successful extensions: 17336
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17288
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)