Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0405
         (720 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122205-1|AAM52717.1|  351|Drosophila melanogaster LP02978p pro...    29   4.8  
AE014296-3296|AAF49055.2|  363|Drosophila melanogaster CG6933-PC...    29   4.8  
AE014296-3295|AAN11622.1|  351|Drosophila melanogaster CG6933-PB...    29   4.8  
AE014296-3294|AAN11621.1|  351|Drosophila melanogaster CG6933-PA...    29   4.8  
AY069420-1|AAL39565.1|  514|Drosophila melanogaster LD13436p pro...    29   8.4  
AE013599-476|AAF59211.1|  514|Drosophila melanogaster CG12042-PA...    29   8.4  

>AY122205-1|AAM52717.1|  351|Drosophila melanogaster LP02978p
           protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 350 VCSSSASENQMNGSQPKFLRNCLQATEHTY 439
           VCS+SA E   N   P ++ N L  TE+ Y
Sbjct: 82  VCSTSAVETCSNVKSPMYVANPLNCTEYAY 111


>AE014296-3296|AAF49055.2|  363|Drosophila melanogaster CG6933-PC,
           isoform C protein.
          Length = 363

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 350 VCSSSASENQMNGSQPKFLRNCLQATEHTY 439
           VCS+SA E   N   P ++ N L  TE+ Y
Sbjct: 94  VCSTSAVETCSNVKSPMYVANPLNCTEYAY 123


>AE014296-3295|AAN11622.1|  351|Drosophila melanogaster CG6933-PB,
           isoform B protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 350 VCSSSASENQMNGSQPKFLRNCLQATEHTY 439
           VCS+SA E   N   P ++ N L  TE+ Y
Sbjct: 82  VCSTSAVETCSNVKSPMYVANPLNCTEYAY 111


>AE014296-3294|AAN11621.1|  351|Drosophila melanogaster CG6933-PA,
           isoform A protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 350 VCSSSASENQMNGSQPKFLRNCLQATEHTY 439
           VCS+SA E   N   P ++ N L  TE+ Y
Sbjct: 82  VCSTSAVETCSNVKSPMYVANPLNCTEYAY 111


>AY069420-1|AAL39565.1|  514|Drosophila melanogaster LD13436p
           protein.
          Length = 514

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 498 ILNGIKQLFICKHCLRSKC 442
           ILN I  LF C+HC + +C
Sbjct: 17  ILNPINTLFFCRHCPKLRC 35


>AE013599-476|AAF59211.1|  514|Drosophila melanogaster CG12042-PA
           protein.
          Length = 514

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 498 ILNGIKQLFICKHCLRSKC 442
           ILN I  LF C+HC + +C
Sbjct: 17  ILNPINTLFFCRHCPKLRC 35


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,258,285
Number of Sequences: 53049
Number of extensions: 454257
Number of successful extensions: 956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)