Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0404
         (671 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1RLB9 Cluster: Transcription factor protein; n=2; Cion...    34   3.6  
UniRef50_UPI0000D56627 Cluster: PREDICTED: similar to Low-densit...    33   6.3  
UniRef50_UPI000011D063 Cluster: UPI000011D063 related cluster; n...    33   6.3  

>UniRef50_Q1RLB9 Cluster: Transcription factor protein; n=2; Ciona
           intestinalis|Rep: Transcription factor protein - Ciona
           intestinalis (Transparent sea squirt)
          Length = 1004

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 221 SIAESPLLRILLECCSR--HHSVIPTVTDNCSCVPRPVSDEIQKRNSRIASSPSSENER 391
           SI  SPLL + L   S   +  ++P  ++N S  P PV+   QK  S IA S  + NE+
Sbjct: 619 SIDPSPLLALQLPTSSTETNQQIVPRSSENIS-TPPPVNSTSQKNTSNIAVSSKTGNEQ 676


>UniRef50_UPI0000D56627 Cluster: PREDICTED: similar to Low-density
           lipoprotein receptor-related protein 1B precursor
           (Low-density lipoprotein receptor-related
           protein-deleted in tumor) (LRP-DIT); n=1; Tribolium
           castaneum|Rep: PREDICTED: similar to Low-density
           lipoprotein receptor-related protein 1B precursor
           (Low-density lipoprotein receptor-related
           protein-deleted in tumor) (LRP-DIT) - Tribolium
           castaneum
          Length = 392

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +2

Query: 260 CCSRHHSVIPTVTDNCSCVPRPVSDEIQKRNSRIASSPSSENERPYRAVCIPVSSLSIY* 439
           CC RHH    TVT+   C  + +SD  ++     AS   S N   Y  + I + +L I  
Sbjct: 215 CCDRHHDPNCTVTNRPKCC-QVLSDSYEELEYGSASVTQSHNGARY--LFITICTLCILF 271

Query: 440 IVLVIAIL 463
           ++L+  +L
Sbjct: 272 VILLFLVL 279


>UniRef50_UPI000011D063 Cluster: UPI000011D063 related cluster; n=1;
           unknown|Rep: UPI000011D063 UniRef100 entry - unknown
          Length = 111

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -1

Query: 278 CDAGYSIQVECAAVGFQRSTSTTQMHKLLVKTVE-FTITSINSMIH*ILEFT 126
           C +G S+++EC AVGFQ +TS     +   KT E   ++++NS I     FT
Sbjct: 27  CKSGTSMRMECQAVGFQ-ATSVAWYRQSPQKTFELIALSTVNSAIKYEQNFT 77


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,312,028
Number of Sequences: 1657284
Number of extensions: 12277275
Number of successful extensions: 29708
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29704
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)