Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0404
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952...    28   5.9  
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    28   5.9  
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786...    28   5.9  
02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824     28   7.8  

>02_02_0372 +
           9522751-9522964,9523043-9523255,9523471-9523555,
           9524373-9524448,9524974-9525150,9525473-9525566,
           9526357-9526466,9526568-9526657,9526752-9526832,
           9528468-9529277,9530777-9530896
          Length = 689

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +2

Query: 209 VLCSSIAESPLLRILLECCSRHHSVIPTVTDNCSCVPRPVSDEIQKRNSRIASSPSSENE 388
           +L   +  +PL R+LL  CS   S     + + S  P P S  +   +   A   +    
Sbjct: 6   LLLLPVRSAPLRRLLLCRCSSSSSPAAAASASSSACPVPASSVLAPYHRAFARRMALAGV 65

Query: 389 RPYRAVCIPVS 421
            P+  V + VS
Sbjct: 66  HPHHRVAVGVS 76


>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 281 VIPTVTDNCSCVPRPVSDEIQKRNSRIASSPSSENERPYRAVCIPVSSLS 430
           V+ +V      +  PVS E+ + N +++  P   N RPY    I V  +S
Sbjct: 833 VVVSVKGTTRGINSPVSGEVVEVNDQLSDLPGLVNARPYETGWIIVVKIS 882


>01_06_0358 -
           28677781-28677901,28678327-28678430,28678542-28678625,
           28679221-28679265,28679523-28679594,28679721-28679759,
           28679966-28680061,28680492-28680566,28681717-28681764,
           28681888-28681971,28682141-28682341,28682394-28682561,
           28683232-28683372,28683470-28683517,28683845-28684087,
           28684184-28684297,28685134-28685163,28685361-28685951,
           28686033-28686620,28686744-28686863,28687764-28687938,
           28688397-28688562,28688653-28688755,28689227-28689319,
           28690759-28690918,28691754-28691872
          Length = 1275

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 296 TDNCSCVPRPVSDEIQKRNSRIASSPSSENERPYRAVCIPVSSL 427
           T+N S VP PVS +++  NS   S   S+NE   +  C P  SL
Sbjct: 539 TNNLSNVPYPVSGKVE--NSLDYSGDLSKNEDVQQTSCQPNQSL 580


>02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824
          Length = 613

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/64 (31%), Positives = 33/64 (51%)
 Frame = +3

Query: 261 AVAGITVSYPLSRITAPACRDRYPTKYRNATHGSPHRRVPRMNALIVLSAFL*ALYQFIK 440
           A+  I V+  +  + +PA R  +PT +R+      +  V    A+IVL   L A YQF+ 
Sbjct: 276 AMCAIMVTVGVLTLLSPALRHYHPTHHRSIMLYDINLDVVLTMAIIVLVIVLEA-YQFVA 334

Query: 441 LFWS 452
           + +S
Sbjct: 335 VLFS 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,036,143
Number of Sequences: 37544
Number of extensions: 333083
Number of successful extensions: 840
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)