Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0404
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_6901| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   6.0  
SB_43076| Best HMM Match : PDEase_I (HMM E-Value=0.0034)               28   7.9  

>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 287 PTVTDNCSCVPRPVSDEIQKRNSRIASSPSSEN 385
           P   DN +  P+P SDEI K NS+++ S ++ N
Sbjct: 389 PKAKDNITRSPKPASDEIDK-NSKVSGSSTNMN 420


>SB_6901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -3

Query: 429 DKEL-TGMQTAR*GRSFSELGDEAIREL 349
           D EL +GMQTA+ GR  SEL ++ IRE+
Sbjct: 60  DLELRSGMQTAQRGRKQSELKEKKIREI 87


>SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 764

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 263 CSRHHSVIP---TVTDNCSCVPRPVSDEIQKRNSRIASSPSSENERPYR 400
           C ++HS+     T   NC   P  V  +I K+N   +SS  SE + P R
Sbjct: 52  CDKNHSISSKHLTERANCDDFPGMVVQDINKQNVLPSSSSGSEVKSPKR 100


>SB_43076| Best HMM Match : PDEase_I (HMM E-Value=0.0034)
          Length = 233

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +2

Query: 224 IAESPLLRILLECCSRHHSVIPTVTDNCSCVPRPVSDEIQKRNSRIASSPSSEN---ERP 394
           ++E  L R+     S     IP   D  S  PR +  E   RNS +A+  SSE    ER 
Sbjct: 51  VSEEELQRLTAHEISSPDEEIPHGFDKFSFAPRTIQMEETVRNSTLAALYSSEGSVMERH 110

Query: 395 Y--RAVCIPVSS 424
           +  + VCI  SS
Sbjct: 111 HFAQTVCILNSS 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,901,018
Number of Sequences: 59808
Number of extensions: 400181
Number of successful extensions: 901
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)