Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0404
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66850.1 68414.m07598 protease inhibitor/seed storage/lipid t...    29   2.8  
At5g66530.1 68418.m08388 aldose 1-epimerase family protein simil...    27   8.6  
At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containi...    27   8.6  
At2g22850.1 68415.m02713 bZIP transcription factor family protei...    27   8.6  

>At1g66850.1 68414.m07598 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           GP|3062791 Lipid transfer protein {Brassica rapa};
           contains Pfam profile: PF00234: protease inhibitor/seed
           storage/LTP family
          Length = 102

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 210 CCARRSLKAHC-CAFYLNAVAGITVSYPLSRITAPACRDRYPT 335
           CCA+ + +  C C F  N      +S P +R    AC   YPT
Sbjct: 59  CCAKLTEQQSCLCGFAKNPAFAQYISSPNARKVLLACNVAYPT 101


>At5g66530.1 68418.m08388 aldose 1-epimerase family protein similar
           to apospory-associated protein C; APOC [Chlamydomonas
           reinhardtii] GI:6970044; contains Pfam profile PF01263:
           Aldose 1-epimerase
          Length = 307

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 578 DSETFPPFSYTIQLQILIKLTSEHGY*TKIEYKSLNW 468
           D+ TFP F  T+ L    +L  ++G   KI  K+ NW
Sbjct: 224 DAVTFPGFVDTVYLDAPNELQFDNGLGDKIIIKNTNW 260


>At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 591

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 23/72 (31%), Positives = 32/72 (44%)
 Frame = +1

Query: 208 CVVLVDR*KPTAAHST*ML*PASQCHTHCHG*LLLRAATGIRRNTETQLTDRLIAEFRE* 387
           C V   R  PT +H   M+   S   T C G  L R+   +RRN+     + L + F   
Sbjct: 66  CRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRS---LRRNSSLP-ANPLSSSF--- 118

Query: 388 TPLSCCLHSCEL 423
             L CC+ S +L
Sbjct: 119 -ALKCCIKSGDL 129


>At2g22850.1 68415.m02713 bZIP transcription factor family protein
           contains a bZIP transcription factor basic domain
           signature (PDOC00036)
          Length = 227

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 314 VPRPVSDEIQKRNSRIASSPSSEN 385
           VP P SDE+  +N++I S+ ++ N
Sbjct: 91  VPSPQSDELDSKNTKIRSNATNHN 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,773,053
Number of Sequences: 28952
Number of extensions: 274710
Number of successful extensions: 686
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)