Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0403
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0633 - 30492742-30492987,30493082-30494194 29 2.9
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 29 3.8
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715... 29 5.0
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 29 5.0
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 6.6
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 28 8.7
>02_05_0633 - 30492742-30492987,30493082-30494194
Length = 452
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 81 CNEKKAASAVSWRLAKRSCCICVRRRPQRRC 173
C+ +KAA AV + A R+C C+RRR + C
Sbjct: 3 CSSEKAAGAVGGKAA-RACDSCLRRRARWYC 32
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +2
Query: 413 ESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 568
E G+NV+ CE A+ + +S +V + W + L+ L ++ +
Sbjct: 182 EPEAGANVVKSCESLFAALVGLTAVSLHLVETFLIKWRKEKLTQLTVYVFQM 233
>06_03_0151 +
17270688-17270698,17271149-17271281,17271548-17271589,
17271706-17271815,17271957-17272035,17272114-17272287,
17272386-17272466,17272761-17272988,17273067-17273402,
17273501-17273586,17273642-17273783,17274596-17274687,
17274770-17274904,17275142-17275304,17275393-17275482,
17275568-17275753,17276109-17276141,17276700-17276762,
17276839-17276901,17276983-17277042,17277258-17277410,
17277530-17277613,17278434-17278610,17278685-17278791,
17278858-17279071,17279158-17279261,17279926-17280061,
17280191-17280316,17280682-17280792,17280968-17281066,
17281367-17281633,17281707-17281822,17281853-17282084,
17282597-17282664,17282682-17282807,17282980-17283040
Length = 1495
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 204 LLFISKILQNV-LRTTNATSLLILLNSNRSKPYL*KKYTNTWCLKTRAFLTNT 359
+ FIS +L+N+ L T + +L L + K+ N W L +AFL T
Sbjct: 823 MYFISLVLENLALSTDDNEDILYCLKGWNQALEMAKQKNNQWALYAKAFLDRT 875
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 302 MKKVYK-HLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINYC 448
++KVY+ + +NEG+ +H+ F + MY+ Y + ++ C
Sbjct: 303 LEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYESMMNLAEEIVTRC 352
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +2
Query: 398 VNLVDESAFGSNVINYCEQF--ITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLN 571
V +VDE +GS + Y E+ I FE F ++ + P++ E N+ +LL+ + +L
Sbjct: 856 VPIVDEEFYGSKLRGYVEELRAIGVQFE-FANANLHIADQPLSME--NVILLLQWIKDLR 912
Query: 572 LIGIEI 589
IG+++
Sbjct: 913 SIGVQL 918
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 630 CFARTDLSLLDECIKFKFLNRGVAQ 704
C ++ +S++DEC+K FL +AQ
Sbjct: 1964 CSSKDSVSVIDECLKLLFLFHSLAQ 1988
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,516,837
Number of Sequences: 37544
Number of extensions: 334260
Number of successful extensions: 826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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