Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0403
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z75710-3|CAB00026.1|  275|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna...    29   4.5  

>AL023838-2|CAA19505.1|  452|Caenorhabditis elegans Hypothetical
           protein Y43C5A.2 protein.
          Length = 452

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 173 YVSADTDADEPIIYFENITECLTDDQCDKFTYF 271
           Y S  TD       F+N T  L  D CD+F YF
Sbjct: 327 YSSTYTDLGAKFSTFDNFTGPLGKDDCDEFQYF 359


>Z75710-3|CAB00026.1|  275|Caenorhabditis elegans Hypothetical
           protein D1081.5 protein.
          Length = 275

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 171 CTLAPIRTPTSLLFISKILQNVLRTTNATSLLILLNSNRSKPYL*KKYTNTWCLKTR 341
           C  + I   +  +    +L++ LRT NA +  ILL  +   P      +N W +K R
Sbjct: 197 CEPSQIEENSGQILFQNVLESALRTPNANNNTILLTDSEVTPV---NISNLWNVKLR 250


>U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna
           synthetase protein2 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 449 EQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLN 571
           E+F   ++E F    K V     NW+ND   +L + + +++
Sbjct: 131 EEFRAKVYETFVAMEKAVTGEQENWKNDEHMMLWQQIKDIS 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,911,373
Number of Sequences: 27780
Number of extensions: 331969
Number of successful extensions: 950
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)