Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0403
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) f...    34   0.084
At1g11450.1 68414.m01315 nodulin MtN21 family protein similar to...    32   0.45 
At3g17360.1 68416.m02218 kinesin motor protein-related similar t...    29   2.4  
At2g36810.1 68415.m04514 expressed protein                             29   2.4  
At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ bo...    29   4.2  
At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE...    27   9.6  

>At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N)
           family protein similar to SP|Q9RHV9 Lysyl-tRNA
           synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Bacillus
           stearothermophilus}; contains Pfam profile: PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 602

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = +2

Query: 305 KKVYK-HLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINYCEQFITAIFEIF 481
           +KVY+   + +NEG+  +H+  F  + MY+ Y +          ++  C   +     I 
Sbjct: 321 EKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYHSMMDMAELIVTQCSMAVNGKLTID 380

Query: 482 TLSSKIVVAVPVNWENDNLSVLLKHLHNLN 571
              ++I +  P  W  + +  L+K +  +N
Sbjct: 381 YQGTEICLERP--WRRETMHNLVKEITGIN 408


>At1g11450.1 68414.m01315 nodulin MtN21 family protein similar to
           GI:2598575 MtN21 (GI:2598575) {Medicago truncatula}
          Length = 260

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = -3

Query: 351 LKTPSFLSTKCLYTFFINKACSCLSSAK*VNLSHW---SSVRHSVIFSK*IIGSSASVSA 181
           +K P   S+ CL + F    C+ LS  K  +L HW         VI    +IG + S  A
Sbjct: 121 IKYPCKFSSTCLMSIFAAFQCALLSLYKSRDLKHWIIDDGFVIGVIIYAGVIGQAMSTVA 180

Query: 180 LTYNDAVAGA*HKYSTIVLLVAMIPLT 100
            T+     GA   +++ ++ V++I  T
Sbjct: 181 ATWGINRLGA--VFASAIMPVSLISAT 205


>At3g17360.1 68416.m02218 kinesin motor protein-related similar to
            KLP2 protein GB:CAA63826 from [Xenopus laevis]
          Length = 2008

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 490  AERKNFENGRDKLFAIVNNVAAERRL-VDQIHICLIHNHCIEQYVVFVKNAL 338
            + +++ +N  D+LF  +  V  E  L   Q+H   +HN  +E   + +K AL
Sbjct: 1468 SNKRDIKNEMDELFDALCKVQLELELKASQVHELFVHNENLENCSIDLKTAL 1519


>At2g36810.1 68415.m04514 expressed protein 
          Length = 1071

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 552 NICTT*ISLELKL*IKTNHVENRVIDCFARTDLSL 656
           N CTT +S+E KL I+T +   +++D F    LSL
Sbjct: 616 NACTTLVSVEPKLTIETRNRVMKILDQFFSISLSL 650


>At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ
           boundaries domain protein 1 (LBD1) identical to
           SP|Q9LQR0 LOB domain protein 1 {Arabidopsis thaliana}
          Length = 190

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +3

Query: 51  DETNTTNSCLCNEKKAASAVSWRLAKRSCCIC--VRRRPQRRCTLAPIRTPT 200
           D +  T   + +      ++S R+    C  C  +RRR   RC LAP   PT
Sbjct: 6   DASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPT 57


>At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE) /
           sigma-like factor (SIG5) identical to RNA polymerase
           sigma subunit SigE [Arabidopsis thaliana] GI:4972299,
           sigma-like factor [Arabidopsis thaliana] GI:4033838;
           contains Pfam profiles PF04545: Sigma-70, region 4,
           PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2
          Length = 517

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 517 DGHGHNDFTAERKNFENGRDKLFAIVNNVAAERRLVDQIHICLIHN 380
           DG      +  RK  E+G +K   + NNV  E+R+     I L  N
Sbjct: 124 DGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALKRN 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,555,910
Number of Sequences: 28952
Number of extensions: 284817
Number of successful extensions: 734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)