Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0402
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       28   6.5  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    28   6.5  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    28   6.5  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    28   6.5  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    28   6.5  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    28   6.5  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    27   8.6  

>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 265 RREFQDISTVYLLQLEPFAPPFRLYP*KYKHDSYLRSA*YKSI 137
           R+   D  T+ L   EP  P FR+ P  ++   Y+R A  + I
Sbjct: 404 RQHTTDEDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDI 446


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
           protein 89, isoform e protein.
          Length = 5992

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 265 RREFQDISTVYLLQLEPFAPPFRLYP*KYKHDSYLRSA*YKSI 137
           R+   D  T+ L   EP  P FR+ P  ++   Y+R A  + I
Sbjct: 404 RQHTTDEDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDI 446


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
           protein 89, isoform a protein.
          Length = 6632

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 265 RREFQDISTVYLLQLEPFAPPFRLYP*KYKHDSYLRSA*YKSI 137
           R+   D  T+ L   EP  P FR+ P  ++   Y+R A  + I
Sbjct: 404 RQHTTDEDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDI 446


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
           protein 89, isoform g protein.
          Length = 7122

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 265 RREFQDISTVYLLQLEPFAPPFRLYP*KYKHDSYLRSA*YKSI 137
           R+   D  T+ L   EP  P FR+ P  ++   Y+R A  + I
Sbjct: 404 RQHTTDEDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDI 446


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
           protein 89, isoform f protein.
          Length = 7441

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 265 RREFQDISTVYLLQLEPFAPPFRLYP*KYKHDSYLRSA*YKSI 137
           R+   D  T+ L   EP  P FR+ P  ++   Y+R A  + I
Sbjct: 404 RQHTTDEDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDI 446


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
           protein 89, isoform b protein.
          Length = 8081

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 265 RREFQDISTVYLLQLEPFAPPFRLYP*KYKHDSYLRSA*YKSI 137
           R+   D  T+ L   EP  P FR+ P  ++   Y+R A  + I
Sbjct: 404 RQHTTDEDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDI 446


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
           potassium channelsprotein 2 protein.
          Length = 1564

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 430 VTTAAPPVQTETHYCFTAEIGRV 498
           +T A PP+  E +YCF  +  RV
Sbjct: 928 LTNAIPPIMVEDNYCFVVDGERV 950


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,542,578
Number of Sequences: 27780
Number of extensions: 301866
Number of successful extensions: 509
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)