Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0402
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ...    28   6.0  
At1g67700.2 68414.m07726 expressed protein                             27   7.9  
At1g67700.1 68414.m07725 expressed protein                             27   7.9  

>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
           zinc dependent protease [Arabidopsis thaliana]
           GI:7650138; contains Pfam profile PF00004: ATPase AAA
           family
          Length = 855

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 353 PLSTRWAASSSTHLRNKKNKKVVTAFTLRPSRISGHLNCLSSS 225
           P   R + SS    R     K+ + F L PSR +G + C S+S
Sbjct: 26  PSQFRGSLSSFVRRRKPTEAKLSSKFNLFPSRRNGLITCCSTS 68


>At1g67700.2 68414.m07726 expressed protein
          Length = 231

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 178 YIFKDTV*KEVQRVLIEEDRQLRCPEILDGRSVNAVTTFLF 300
           YI+KDT+ + +  V+  ++++++   I   R +   T F +
Sbjct: 121 YIYKDTIARNIAAVIYRDEKEIQKTAIKQHRVLRTATEFRY 161


>At1g67700.1 68414.m07725 expressed protein
          Length = 230

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 178 YIFKDTV*KEVQRVLIEEDRQLRCPEILDGRSVNAVTTFLF 300
           YI+KDT+ + +  V+  ++++++   I   R +   T F +
Sbjct: 121 YIYKDTIARNIAAVIYRDEKEIQKTAIKQHRVLRTATEFRY 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,756,686
Number of Sequences: 28952
Number of extensions: 284031
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)